[2020-06-12 15:57:12,015] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/20170330/intel/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml
[2020-06-12 15:57:12,015] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml
[2020-06-12 15:57:12,015] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2020-06-12 15:57:12,027] multiqc [DEBUG ] Loading config settings from: /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml
[2020-06-12 15:57:12,027] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2020-06-12 15:57:12,027] multiqc [DEBUG ] Command used: /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HHGL7BGXF/merged
[2020-06-12 15:57:12,027] multiqc [DEBUG ] Could not connect to multiqc.info for version check
[2020-06-12 15:57:12,027] multiqc [INFO ] This is MultiQC v1.0.dev0
[2020-06-12 15:57:12,027] multiqc [DEBUG ] Command : /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HHGL7BGXF/merged
[2020-06-12 15:57:12,027] multiqc [DEBUG ] Working dir : /beegfs/mk5636/logs/html/HHGL7BGXF/merged
[2020-06-12 15:57:12,027] multiqc [INFO ] Template : default
[2020-06-12 15:57:12,027] multiqc [DEBUG ] Running in --force mode, will overwrite any existing reports.
[2020-06-12 15:57:12,027] multiqc [INFO ] Searching '/beegfs/mk5636/logs/html/HHGL7BGXF/merged'
[2020-06-12 15:57:12,027] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow
[2020-06-12 15:57:12,028] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-10241672/tmpMnPnHc
[2020-06-12 15:57:12,055] multiqc [DEBUG ] Ignoring file as too large: undetermined_barcodes.txt
[2020-06-12 15:57:12,463] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:12,490] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 19 samples (table)
[2020-06-12 15:57:12,498] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2020-06-12 15:57:12,499] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2020-06-12 15:57:12,517] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:12,526] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:12,533] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2020-06-12 15:57:12,552] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:12,703] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:12,712] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:13,278] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:13,287] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:13,299] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:13,441] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:13,584] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:13,704] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:13,826] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:13,834] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:15,281] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:15,292] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:15,442] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:15,800] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:15,922] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:15,943] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:15,952] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:15,964] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:16,085] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:16,902] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found.
[2020-06-12 15:57:16,915] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:16,924] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:17,045] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:17,166] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:17,286] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:17,408] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:17,529] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:17,538] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:28,133] multiqc.modules.fastqc.fastqc [INFO ] Found 38 reports
[2020-06-12 15:57:29,660] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHGL7BGXF/merged',)
[2020-06-12 15:57:29,695] multiqc [INFO ] Report : multiqc_report.html
[2020-06-12 15:57:29,696] multiqc [INFO ] Data : multiqc_data
[2020-06-12 15:57:29,696] multiqc [DEBUG ] Moving data file from '/state/partition1/job-10241672/tmpMnPnHc/multiqc_data/multiqc_fastqc.txt' to '/beegfs/mk5636/logs/html/HHGL7BGXF/merged/multiqc_data'
[2020-06-12 15:57:29,698] multiqc [DEBUG ] Moving data file from '/state/partition1/job-10241672/tmpMnPnHc/multiqc_data/multiqc_general_stats.txt' to '/beegfs/mk5636/logs/html/HHGL7BGXF/merged/multiqc_data'
[2020-06-12 15:57:29,700] multiqc [DEBUG ] Moving data file from '/state/partition1/job-10241672/tmpMnPnHc/multiqc_data/multiqc_sources.txt' to '/beegfs/mk5636/logs/html/HHGL7BGXF/merged/multiqc_data'
[2020-06-12 15:57:29,798] multiqc [INFO ] MultiQC complete