FastQCFastQC Report
Wed 18 Nov 2020
HHGJGAFX2_n01_ADT1_1106.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHHGJGAFX2_n01_ADT1_1106.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences169987528
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATGCGAT709900.018.1516781
CATGGCG822000.017.685681
TCTGGAA738400.017.670571
ATGGCGC574250.017.6367192
TGGACCC496050.017.63458410
CACTGAG567750.017.567392
GGCCCTA348050.017.51686910
TTGTAGG849550.017.4819281
CAATGGA523850.017.3343938
GTTGGAC506500.017.3181348
GGGACCT360150.017.295131
ATGAATG521950.017.28254510
TCGTCGC945250.017.281866
CCTCTGA863750.017.232751
ACTGAAC557550.017.2278371
TCTGACA639050.017.1517123
CTGACAC609650.017.1176834
GCTGCAG579400.017.1168841
ATGGGAG447950.017.092291
GGGAGAT457750.017.0913541
Produced by FastQC (version 0.11.5)