HHGHNAFX2_n02_DS2221-1.dk.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGHNAFX2_n02_DS2221-1.dk.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6752037
Sequences flagged as poor quality	0
Sequence length	76
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	400713	5.934697928936112	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	60438	0.8951076541790278	No Hit
GTGACTGGAGTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATC	16890	0.25014673349686917	Illumina Single End PCR Primer 1 (100% over 38bp)
GTGACTGGAGAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTC	13283	0.1967258177050866	Illumina Single End PCR Primer 1 (100% over 40bp)
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	10798	0.15992210943156857	Illumina Single End PCR Primer 1 (98% over 50bp)
GTGACTGGAGTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCT	7185	0.10641233156749585	Illumina Single End PCR Primer 1 (100% over 39bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGACTG	10565	61.82353	1
TGACTGG	10720	60.475437	2
GACTGGA	11600	57.192257	3
ACTGGAG	11900	53.708656	4
CTGGAGT	11245	50.410282	5
AAGGGGG	52850	48.7554	67
AAAGGGG	52890	48.693863	66
AGGGGGG	53500	48.47667	68
GGAGTTC	9575	45.81001	7
AAAAGGG	57820	44.84497	65
TGGAGTT	15065	44.013374	6
CATTAAA	73300	43.38463	55
GATCGAG	2670	43.134968	8
CCGTATC	74445	42.837677	49
GTATCAT	71540	42.748028	51
CGTATCA	74980	42.62101	50
AGATAGA	10460	42.503048	7
ATCATTA	73735	42.36423	53
TCATTAA	74130	42.204277	54
CGCCGTA	78680	42.036793	47