HHGHNAFX2_n02_DS2220-1.dk.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHGHNAFX2_n02_DS2220-1.dk.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6547531
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	100255	1.5311878630280635	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	25183	0.38461826297576907	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGCCGTA	19530	43.363415	47
GTGACTG	3415	42.83138	1
CCGTATC	19615	42.568905	49
TCGCCGT	19780	42.125343	46
GCCGTAT	20665	41.269623	48
GGTCGCC	21345	41.05303	44
CGTATCA	20605	40.9652	50
GTCGCCG	21325	40.87851	45
GTGGTCG	21810	39.873505	42
CTCGGTG	21430	39.715656	38
TGGTCGC	21735	39.430855	43
TGACTGG	3680	39.328144	2
GTATCAT	21020	39.224396	51
ATCTCGG	21990	39.00603	36
TCTCGGT	21685	38.909424	37
GATCTCG	22260	38.265648	35
GACTGGA	3970	38.114937	3
GGTGGTC	22850	37.859886	41
AGGGGGG	18155	37.703323	68
TCGGTGG	23260	37.43355	39