[2019-06-26 20:08:30,899] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/20170330/intel/lib/python2.7/site-packages/multiqc-1.0.dev0-py2.7.egg/multiqc_config.yaml
[2019-06-26 20:08:30,899] multiqc [DEBUG ] No MultiQC config found: /home/mk5636/.multiqc_config.yaml
[2019-06-26 20:08:30,899] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml
[2019-06-26 20:08:31,776] multiqc [DEBUG ] Loading config settings from: /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml
[2019-06-26 20:08:31,776] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}}
[2019-06-26 20:08:31,777] multiqc [DEBUG ] Command used: /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HHG5CBGXB/merged
[2019-06-26 20:08:31,777] multiqc [DEBUG ] Could not connect to multiqc.info for version check
[2019-06-26 20:08:31,777] multiqc [INFO ] This is MultiQC v1.0.dev0
[2019-06-26 20:08:31,777] multiqc [DEBUG ] Command : /share/apps/multiqc/20170330/intel/bin/multiqc -f -c /home/mk5636/SCRIPTS/hpcpipe/mqc_config.yaml /beegfs/mk5636/logs/html/HHG5CBGXB/merged
[2019-06-26 20:08:31,777] multiqc [DEBUG ] Working dir : /beegfs/mk5636/logs/html/HHG5CBGXB/merged
[2019-06-26 20:08:31,777] multiqc [INFO ] Template : default
[2019-06-26 20:08:31,777] multiqc [DEBUG ] Running in --force mode, will overwrite any existing reports.
[2019-06-26 20:08:31,777] multiqc [INFO ] Searching '/beegfs/mk5636/logs/html/HHG5CBGXB/merged'
[2019-06-26 20:08:31,778] multiqc [DEBUG ] Analysing modules: rna_seqc, custom_content, peddy, methylQA, qualimap, preseq, quast, rseqc, busco, goleft_indexcov, snpeff, gatk, htseq, bcftools, featureCounts, picard, prokka, samblaster, samtools, bamtools, bismark, hicup, salmon, kallisto, slamdunk, star, tophat, bowtie2, bowtie1, cutadapt, trimmomatic, skewer, fastq_screen, fastqc, clusterflow
[2019-06-26 20:08:31,778] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-1862252/tmpTNhn9e
[2019-06-26 20:08:31,917] multiqc [DEBUG ] Ignoring file as too large: undetermined_barcodes.txt
[2019-06-26 20:08:33,303] multiqc.modules.rna_seqc.rna_seqc [DEBUG ] Could not find any RNA-SeQC data in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:33,366] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 26 samples (table)
[2019-06-26 20:08:33,378] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table)
[2019-06-26 20:08:33,380] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table)
[2019-06-26 20:08:33,410] multiqc.modules.peddy.peddy [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:33,422] multiqc.modules.methylQA.methylQA [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:33,428] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2019-06-26 20:08:33,467] multiqc.modules.qualimap.qualimap [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:35,796] multiqc.modules.preseq.preseq [DEBUG ] Could not find any preseq data in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:35,807] multiqc.modules.quast.quast [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:36,938] multiqc.modules.rseqc.rseqc [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:36,949] multiqc.modules.busco.busco [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:36,967] multiqc.modules.goleft_indexcov.goleft_indexcov [DEBUG ] Did not find goleft indexcov outputs in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:37,235] multiqc.modules.snpeff.snpeff [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:37,518] multiqc.modules.gatk.gatk [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:37,801] multiqc.modules.htseq.htseq [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:38,075] multiqc.modules.bcftools.bcftools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:38,086] multiqc.modules.featureCounts.feature_counts [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:41,175] multiqc.modules.picard.picard [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:41,189] multiqc.modules.prokka.prokka [DEBUG ] Could not find any Prokka data in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:41,529] multiqc.modules.samblaster.samblaster [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:42,354] multiqc.modules.samtools.samtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:42,594] multiqc.modules.bamtools.bamtools [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:42,633] multiqc.modules.bismark.bismark [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:42,644] multiqc.modules.hicup.hicup [DEBUG ] Could not find any HiCUP data in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:42,662] multiqc.modules.salmon.salmon [DEBUG ] Could not find any Salmon data in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:42,907] multiqc.modules.kallisto.kallisto [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:44,694] multiqc.modules.slamdunk.slamdunk [DEBUG ] No slamdunk reports found.
[2019-06-26 20:08:44,712] multiqc.modules.star.star [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:44,724] multiqc.modules.tophat.tophat [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:44,946] multiqc.modules.bowtie2.bowtie2 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:45,184] multiqc.modules.bowtie1.bowtie1 [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:45,461] multiqc.modules.cutadapt.cutadapt [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:45,753] multiqc.modules.trimmomatic.trimmomatic [DEBUG ] Could not find any Trimmomatic data in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:46,002] multiqc.modules.skewer.skewer [DEBUG ] Could not find any data in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:08:46,013] multiqc.modules.fastq_screen.fastq_screen [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:09:06,496] multiqc.modules.fastqc.fastqc [INFO ] Found 52 reports
[2019-06-26 20:09:14,992] multiqc.modules.clusterflow.clusterflow [DEBUG ] Could not find any reports in ('/beegfs/mk5636/logs/html/HHG5CBGXB/merged',)
[2019-06-26 20:09:15,072] multiqc [INFO ] Report : multiqc_report.html
[2019-06-26 20:09:15,075] multiqc [INFO ] Data : multiqc_data
[2019-06-26 20:09:15,075] multiqc [DEBUG ] Moving data file from '/state/partition1/job-1862252/tmpTNhn9e/multiqc_data/multiqc_general_stats.txt' to '/beegfs/mk5636/logs/html/HHG5CBGXB/merged/multiqc_data'
[2019-06-26 20:09:15,081] multiqc [DEBUG ] Moving data file from '/state/partition1/job-1862252/tmpTNhn9e/multiqc_data/multiqc_fastqc.txt' to '/beegfs/mk5636/logs/html/HHG5CBGXB/merged/multiqc_data'
[2019-06-26 20:09:15,084] multiqc [DEBUG ] Moving data file from '/state/partition1/job-1862252/tmpTNhn9e/multiqc_data/multiqc_sources.txt' to '/beegfs/mk5636/logs/html/HHG5CBGXB/merged/multiqc_data'
[2019-06-26 20:09:15,233] multiqc [INFO ] MultiQC complete