HHG5CBGXB_n02_MT_9361.TR3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHG5CBGXB_n02_MT_9361.TR3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20525173
Sequences flagged as poor quality	0
Sequence length	151
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTACATTCAGTAGCGAGCTTAACCGAATAGGGGAGGCGTAGGGAAACCG	39627	0.19306536417500597	No Hit
CGGGAACGTATTCACCGCGGCGTGCTGATCCGCGATTACTAGCGATTCCG	30687	0.14950909305368584	No Hit
CCGGGAACGTATTCACCGCGGCGTGCTGATCCGCGATTACTAGCGATTCC	30597	0.14907060710280007	No Hit
CCCCACCATGCCGTAATGTACCGCGTTTTGATCCTGCTTAGGGCAGGTGG	28759	0.14011574957248837	No Hit
CTGGGTTAGAACCTCAAAGACACCAGGGTGGTATTTCAAGGACGGCTCCA	26266	0.12796968873295247	No Hit
GTGATATCGCAGTTTTGAGCCAACACATTTACTTCGGGAGTCCGAACTCT	21852	0.10646438887506576	No Hit
GGAAGAGAAAGCAAAAGCGATTGCCTTAGTAGCGGCGAGCGAAACGGCAG	20627	0.10049610787689828	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TTACATT	14675	41.971073	2
ACATTCA	15820	39.198616	4
ATGCCGT	18290	38.508217	8
CTTACAT	16965	36.754826	1
TTGTACT	4850	36.028404	1
TGTACTC	4935	35.386623	2
TTCAGTA	18635	33.90465	7
CATTGTA	25275	30.8302	145
CATTCAG	21280	30.027737	5
TACGACT	9900	29.863054	2
CTCATAT	3885	29.860611	1
CCGGGAA	33265	29.599337	1
TACATTC	21215	29.26622	3
CAGTAGC	21820	28.49407	9
CTATTAG	8555	27.442633	8
GCTCAGA	6160	27.403175	5
CACGAGT	10525	26.776655	3
CCATTGT	32800	26.654861	145
TGGTTCG	15115	26.649893	3
TCAGTAG	24275	25.521585	8