HHG5CBGXB_n02_MT_30982.TR2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HHG5CBGXB_n02_MT_30982.TR2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20541903
Sequences flagged as poor quality	0
Sequence length	151
%GC	52

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGGTTAGAACCTCAAAGACACCAGGGTGGTATTTCAAGGACGGCTCCA	129502	0.6304284466731247	No Hit
CTCACGAGCAATTAGTATGGGTTAGCTTCACGCGTTACCGCGCTTCCACA	74938	0.364805539194689	No Hit
CTTACATTCAGTAGCGAGCTTAACCGAATAGGGGAGGCGTAGGGAAACCG	49620	0.24155503022285715	No Hit
CCGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCC	46169	0.22475522350582613	No Hit
CCGGGAACGTATTCACCGCAGTATGCTGACCTGCGATTACTAGCGATTCC	41640	0.20270760698266366	No Hit
GTTAGAACCTCAAAGACACCAGGGTGGTATTTCAAGGACGGCTCCACAGA	38694	0.18836618983158473	No Hit
CGGGAACGTATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCG	37033	0.18028027880377	No Hit
CGGGTCTGGGTTAGAACCTCAAAGACACCAGGGTGGTATTTCAAGGACGG	35482	0.17272985857249934	No Hit
CGGGAACGTATTCACCGCAGTATGCTGACCTGCGATTACTAGCGATTCCG	34544	0.16816358250742397	No Hit
GTCTGGGTTAGAACCTCAAAGACACCAGGGTGGTATTTCAAGGACGGCTC	31000	0.1509110426624057	No Hit
AAGAAATCAACCGAGATTCCGCAAGTAGTGGCGAGCGAACGCGGAGGAGC	27411	0.13343943840061945	No Hit
CCCGCCCTACTTTTCGTACGCTTAGTACCACTGTTGAGATTTCGAATACG	25989	0.12651700283075037	No Hit
GTCCCGCCCTACTTTTCGTACGCTTAGTACCACTGTTGAGATTTCGAATA	25785	0.12552391080806877	No Hit
TGAAGATGCAATCTACCCGCTGCTAGACGGAAAGACCCCGTGAACCTTTA	22898	0.11146971144786343	No Hit
CGGAAAGACCCCGTGAACCTTTACTGTAGCTTTGCATTGGACTTTGAAGT	22294	0.10852938016502171	No Hit
GGGGGCTGCTCCTAGTACGAGAGGACCGGAGTGGACGAACCTCTGGTGTA	22259	0.10835899672975771	No Hit
CCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGCGATTCC	21465	0.10449372679833994	No Hit
ATGCAATCTACCCGCTGCTAGACGGAAAGACCCCGTGAACCTTTACTGTA	21416	0.10425518998897033	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ACGAGCA	19670	61.765293	4
TCACGAG	19615	59.553864	2
AGCAATT	24610	53.084743	7
GAGCAAT	27670	50.040333	6
CAATTAG	28665	48.23376	9
GCAATTA	29435	46.946014	8
TTACATT	16445	46.62137	2
CGAGCAA	28855	44.993816	5
CTTACAT	17535	43.958	1
GCTCAGA	12645	42.68481	5
CCGGGAA	47330	42.667683	1
ACATTCA	19200	40.33595	4
TTCAGTA	19265	40.243927	7
CATTCAG	19485	40.15681	5
GGTTAGA	58610	39.94988	4
GGCTCAG	14320	39.612713	4
TGTCCTA	14130	39.326843	5
CTGGCTC	13830	39.088577	2
TTTCCGT	38275	38.554947	145
TACATTC	20245	37.753838	3