[2023-07-31 16:37:17,912] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-07-31 16:37:17,912] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-07-31 16:37:17,912] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-07-31 16:37:17,915] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-07-31 16:37:17,915] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-07-31 16:37:17,915] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HH7LFDRX2/1 [2023-07-31 16:37:18,065] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-07-31 16:37:18,065] multiqc [INFO ] This is MultiQC v1.9 [2023-07-31 16:37:18,065] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HH7LFDRX2/1 [2023-07-31 16:37:18,065] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HH7LFDRX2/1 [2023-07-31 16:37:18,065] multiqc [INFO ] Template : default [2023-07-31 16:37:18,065] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-07-31 16:37:18,065] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HH7LFDRX2/1 [2023-07-31 16:37:18,066] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-07-31 16:37:18,066] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-35909184/tmphs22q4gz [2023-07-31 16:37:18,187] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_undetermined_fastqc.html [2023-07-31 16:37:18,190] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_undetermined_fastqc.html [2023-07-31 16:37:18,257] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T8_A10_b_fastqc.html [2023-07-31 16:37:18,259] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T8_A10_b_fastqc.html [2023-07-31 16:37:18,329] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_A4_b_fastqc.html [2023-07-31 16:37:18,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_A4_b_fastqc.html [2023-07-31 16:37:18,403] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_B3_b_fastqc.html [2023-07-31 16:37:18,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_B3_b_fastqc.html [2023-07-31 16:37:18,476] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_B3_b_fastqc.html [2023-07-31 16:37:18,478] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_B3_b_fastqc.html [2023-07-31 16:37:18,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_A4_b_fastqc.html [2023-07-31 16:37:18,549] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_A4_b_fastqc.html [2023-07-31 16:37:18,550] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_A4_b_fastqc.html [2023-07-31 16:37:18,550] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_A4_b_fastqc.html [2023-07-31 16:37:18,550] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_A4_b_fastqc.html [2023-07-31 16:37:18,550] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_A4_b_fastqc.html [2023-07-31 16:37:18,550] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_A4_b_fastqc.html [2023-07-31 16:37:18,617] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_H3_b_fastqc.html [2023-07-31 16:37:18,619] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_H3_b_fastqc.html [2023-07-31 16:37:18,691] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded 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search pattern filesize limit: HH7LFDRX2_l01_n01_T10_E4_b_fastqc.html [2023-07-31 16:37:18,839] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_E4_b_fastqc.html [2023-07-31 16:37:18,839] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_E4_b_fastqc.html [2023-07-31 16:37:18,839] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_E4_b_fastqc.html [2023-07-31 16:37:18,839] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_E4_b_fastqc.html [2023-07-31 16:37:18,907] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_E10_b_fastqc.html [2023-07-31 16:37:18,909] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_E10_b_fastqc.html [2023-07-31 16:37:18,980] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_C10_b_fastqc.html [2023-07-31 16:37:18,982] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_C10_b_fastqc.html [2023-07-31 16:37:18,982] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_C10_b_fastqc.html [2023-07-31 16:37:18,982] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_C10_b_fastqc.html [2023-07-31 16:37:18,982] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_C10_b_fastqc.html [2023-07-31 16:37:18,982] multiqc [DEBUG ] File ignored by 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rseqc/junction_annotation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_G10_b_fastqc.html [2023-07-31 16:37:19,051] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_G10_b_fastqc.html [2023-07-31 16:37:19,051] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_G10_b_fastqc.html [2023-07-31 16:37:19,118] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_D3_b_fastqc.html [2023-07-31 16:37:19,120] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_D3_b_fastqc.html [2023-07-31 16:37:19,190] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_C4_b_fastqc.html [2023-07-31 16:37:19,192] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_C4_b_fastqc.html [2023-07-31 16:37:19,263] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_G4_b_fastqc.html [2023-07-31 16:37:19,265] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_G4_b_fastqc.html [2023-07-31 16:37:19,337] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_D3_b_fastqc.html [2023-07-31 16:37:19,339] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_D3_b_fastqc.html [2023-07-31 16:37:19,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T8_G10_b_fastqc.html [2023-07-31 16:37:19,413] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T8_G10_b_fastqc.html [2023-07-31 16:37:19,483] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T8_C10_b_fastqc.html [2023-07-31 16:37:19,485] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T8_C10_b_fastqc.html [2023-07-31 16:37:19,558] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_undetermined_fastqc.html [2023-07-31 16:37:19,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_undetermined_fastqc.html [2023-07-31 16:37:19,621] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_E4_b_fastqc.html [2023-07-31 16:37:19,623] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_E4_b_fastqc.html [2023-07-31 16:37:19,623] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_E4_b_fastqc.html [2023-07-31 16:37:19,623] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_E4_b_fastqc.html [2023-07-31 16:37:19,623] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_E4_b_fastqc.html [2023-07-31 16:37:19,623] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_E4_b_fastqc.html [2023-07-31 16:37:19,623] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_E4_b_fastqc.html [2023-07-31 16:37:19,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_G4_b_fastqc.html [2023-07-31 16:37:19,692] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_G4_b_fastqc.html [2023-07-31 16:37:19,762] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_A10_b_fastqc.html [2023-07-31 16:37:19,764] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_A10_b_fastqc.html [2023-07-31 16:37:19,764] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_A10_b_fastqc.html [2023-07-31 16:37:19,764] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_A10_b_fastqc.html [2023-07-31 16:37:19,764] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_A10_b_fastqc.html [2023-07-31 16:37:19,764] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_A10_b_fastqc.html [2023-07-31 16:37:19,764] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T8_A10_b_fastqc.html [2023-07-31 16:37:19,830] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_C4_b_fastqc.html [2023-07-31 16:37:19,832] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_C4_b_fastqc.html [2023-07-31 16:37:19,903] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_H3_b_fastqc.html [2023-07-31 16:37:19,905] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n01_T10_H3_b_fastqc.html [2023-07-31 16:37:19,977] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_F3_b_fastqc.html [2023-07-31 16:37:19,979] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_F3_b_fastqc.html [2023-07-31 16:37:19,979] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_F3_b_fastqc.html [2023-07-31 16:37:19,979] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_F3_b_fastqc.html [2023-07-31 16:37:19,979] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_F3_b_fastqc.html [2023-07-31 16:37:19,979] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_F3_b_fastqc.html [2023-07-31 16:37:19,979] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: HH7LFDRX2_l01_n02_T10_F3_b_fastqc.html [2023-07-31 16:37:20,651] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-07-31 16:37:20,653] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-07-31 16:37:20,663] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-07-31 16:37:20,673] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-07-31 16:37:20,679] multiqc.modules.custom_content.custom_content [INFO ] demux_report-1: Found 13 samples (table) [2023-07-31 16:37:20,685] multiqc [DEBUG ] No samples found: conpair [2023-07-31 16:37:20,694] multiqc [DEBUG ] No samples found: peddy [2023-07-31 16:37:20,725] multiqc [DEBUG ] No samples found: somalier [2023-07-31 16:37:20,732] multiqc [DEBUG ] No samples found: methylQA [2023-07-31 16:37:20,743] multiqc [DEBUG ] No samples found: mosdepth [2023-07-31 16:37:20,751] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-07-31 16:37:20,755] multiqc [DEBUG ] No samples found: qualimap [2023-07-31 16:37:20,766] multiqc [DEBUG ] No samples found: preseq [2023-07-31 16:37:20,793] multiqc [DEBUG ] No samples found: quast [2023-07-31 16:37:20,800] multiqc [DEBUG ] No samples found: qorts [2023-07-31 16:37:20,806] multiqc [DEBUG ] No samples found: rna_seqc [2023-07-31 16:37:20,812] multiqc [DEBUG ] No samples found: rockhopper [2023-07-31 16:37:20,818] multiqc [DEBUG ] No samples found: rsem [2023-07-31 16:37:20,840] multiqc [DEBUG ] No samples found: rseqc [2023-07-31 16:37:20,845] multiqc [DEBUG ] No samples found: busco [2023-07-31 16:37:20,851] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-07-31 16:37:20,857] multiqc [DEBUG ] No samples found: disambiguate [2023-07-31 16:37:20,863] multiqc [DEBUG ] No samples found: supernova [2023-07-31 16:37:20,890] multiqc [DEBUG ] No samples found: deeptools [2023-07-31 16:37:20,896] multiqc [DEBUG ] No samples found: sargasso [2023-07-31 16:37:20,907] multiqc [DEBUG ] No samples found: verifybamid [2023-07-31 16:37:20,914] multiqc [DEBUG ] No samples found: mirtrace [2023-07-31 16:37:20,919] multiqc [DEBUG ] No samples found: happy [2023-07-31 16:37:20,925] multiqc [DEBUG ] No samples found: mirtop [2023-07-31 16:37:20,935] multiqc [DEBUG ] No samples found: homer [2023-07-31 16:37:20,941] multiqc [DEBUG ] No samples found: macs2 [2023-07-31 16:37:20,948] multiqc [DEBUG ] No samples found: theta2 [2023-07-31 16:37:20,953] multiqc [DEBUG ] No samples found: snpeff [2023-07-31 16:37:20,962] multiqc [DEBUG ] No samples found: gatk [2023-07-31 16:37:20,968] multiqc [DEBUG ] No samples found: htseq [2023-07-31 16:37:20,994] multiqc [DEBUG ] No samples found: bcftools [2023-07-31 16:37:21,001] multiqc [DEBUG ] No samples found: featureCounts [2023-07-31 16:37:21,008] multiqc [DEBUG ] No samples found: fgbio [2023-07-31 16:37:21,072] multiqc [DEBUG ] No samples found: dragen [2023-07-31 16:37:21,078] multiqc [DEBUG ] No samples found: dedup [2023-07-31 16:37:21,084] multiqc [DEBUG ] No samples found: damageprofiler [2023-07-31 16:37:21,114] multiqc [DEBUG ] No samples found: biobambam2 [2023-07-31 16:37:21,120] multiqc [DEBUG ] No samples found: mtnucratio [2023-07-31 16:37:21,123] multiqc [DEBUG ] No samples found: picard [2023-07-31 16:37:21,140] multiqc [DEBUG ] No samples found: prokka [2023-07-31 16:37:21,146] multiqc [DEBUG ] No samples found: samblaster [2023-07-31 16:37:21,156] multiqc [DEBUG ] No samples found: samtools [2023-07-31 16:37:21,162] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-07-31 16:37:21,169] multiqc [DEBUG ] No samples found: bamtools [2023-07-31 16:37:21,174] multiqc [DEBUG ] No samples found: jellyfish [2023-07-31 16:37:21,192] multiqc [DEBUG ] No samples found: vcftools [2023-07-31 16:37:21,214] multiqc [DEBUG ] No samples found: longranger [2023-07-31 16:37:21,220] multiqc [DEBUG ] No samples found: stacks [2023-07-31 16:37:21,226] multiqc [DEBUG ] No samples found: varscan2 [2023-07-31 16:37:21,269] multiqc [DEBUG ] No samples found: bbmap [2023-07-31 16:37:21,276] multiqc [DEBUG ] No samples found: bismark [2023-07-31 16:37:21,282] multiqc [DEBUG ] No samples found: biscuit [2023-07-31 16:37:21,288] multiqc [DEBUG ] No samples found: hicexplorer [2023-07-31 16:37:21,294] multiqc [DEBUG ] No samples found: hicup [2023-07-31 16:37:21,315] multiqc [DEBUG ] No samples found: hicpro [2023-07-31 16:37:21,321] multiqc [DEBUG ] No samples found: salmon [2023-07-31 16:37:21,339] multiqc [DEBUG ] No samples found: kallisto [2023-07-31 16:37:21,346] multiqc [DEBUG ] No samples found: slamdunk [2023-07-31 16:37:21,351] multiqc [DEBUG ] No samples found: star [2023-07-31 16:37:21,357] multiqc [DEBUG ] No samples found: hisat2 [2023-07-31 16:37:21,373] multiqc [DEBUG ] No samples found: tophat [2023-07-31 16:37:21,379] multiqc [DEBUG ] No samples found: bowtie2 [2023-07-31 16:37:21,385] multiqc [DEBUG ] No samples found: bowtie1 [2023-07-31 16:37:21,391] multiqc [DEBUG ] No samples found: snpsplit [2023-07-31 16:37:21,397] multiqc [DEBUG ] No samples found: kat [2023-07-31 16:37:21,402] multiqc [DEBUG ] No samples found: leehom [2023-07-31 16:37:21,420] multiqc [DEBUG ] No samples found: adapterRemoval [2023-07-31 16:37:21,431] multiqc [DEBUG ] No samples found: clipandmerge [2023-07-31 16:37:21,453] multiqc [DEBUG ] No samples found: cutadapt [2023-07-31 16:37:21,459] multiqc [DEBUG ] No samples found: flexbar [2023-07-31 16:37:21,465] multiqc [DEBUG ] No samples found: kaiju [2023-07-31 16:37:21,471] multiqc [DEBUG ] No samples found: kraken [2023-07-31 16:37:21,478] multiqc [DEBUG ] No samples found: malt [2023-07-31 16:37:21,484] multiqc [DEBUG ] No samples found: trimmomatic [2023-07-31 16:37:21,511] multiqc [DEBUG ] No samples found: sickle [2023-07-31 16:37:21,517] multiqc [DEBUG ] No samples found: skewer [2023-07-31 16:37:21,522] multiqc [DEBUG ] No samples found: sortmerna [2023-07-31 16:37:21,528] multiqc [DEBUG ] No samples found: biobloomtools [2023-07-31 16:37:21,533] multiqc [DEBUG ] No samples found: fastq_screen [2023-07-31 16:37:21,539] multiqc [DEBUG ] No samples found: afterqc [2023-07-31 16:37:21,545] multiqc [DEBUG ] No samples found: fastp [2023-07-31 16:37:22,416] multiqc.modules.fastqc.fastqc [INFO ] Found 26 reports [2023-07-31 16:37:22,813] multiqc [DEBUG ] No samples found: pycoqc [2023-07-31 16:37:22,819] multiqc [DEBUG ] No samples found: minionqc [2023-07-31 16:37:22,824] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-07-31 16:37:22,832] multiqc [DEBUG ] No samples found: clusterflow [2023-07-31 16:37:22,837] multiqc [DEBUG ] No samples found: bcl2fastq [2023-07-31 16:37:22,855] multiqc [DEBUG ] No samples found: interop [2023-07-31 16:37:22,861] multiqc [DEBUG ] No samples found: ivar [2023-07-31 16:37:22,868] multiqc [DEBUG ] No samples found: flash [2023-07-31 16:37:22,892] multiqc [DEBUG ] No samples found: seqyclean [2023-07-31 16:37:22,892] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-07-31 16:37:22,892] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found. [2023-07-31 16:37:22,892] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-07-31 16:37:22,892] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Lane 1 Demultiplexing Report'. [2023-07-31 16:37:22,892] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane 1 Demultiplexing Report'. [2023-07-31 16:37:22,892] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Lane 1 Demultiplexing Report'. [2023-07-31 16:37:22,892] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Lane 1 Demultiplexing Report'. [2023-07-31 16:37:22,892] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Lane 1 Demultiplexing Report'. [2023-07-31 16:37:22,892] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Lane 1 Demultiplexing Report'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Lane 1 Demultiplexing Report'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Lane Statistics'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Lane Statistics'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Lane Statistics'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Lane Statistics'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Lane Statistics'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Lane Statistics'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Lane Statistics'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-07-31 16:37:22,893] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-07-31 16:37:22,925] multiqc [INFO ] Compressing plot data [2023-07-31 16:37:23,344] multiqc [INFO ] Report : multiqc_report.html [2023-07-31 16:37:23,344] multiqc [INFO ] Data : multiqc_data [2023-07-31 16:37:23,344] multiqc [DEBUG ] Moving data file from '/state/partition1/job-35909184/tmphs22q4gz/multiqc_data' to '/scratch/gencore/logs/html/HH7LFDRX2/1/multiqc_data' [2023-07-31 16:37:23,477] multiqc [INFO ] MultiQC complete