HH7JLAFX2_n01_0909_CD8_CFSE_low.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH7JLAFX2_n01_0909_CD8_CFSE_low.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7488876
Sequences flagged as poor quality	0
Sequence length	151
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TAACAATGGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCACTATG	5355888	71.51791537207987	No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCGCCACTAGGTCCACTATG	1591296	21.248796214545415	No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCGCCACGAGGTCCACTATG	23773	0.31744416652111745	No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCTCCAGTAGGTCCACTATG	18333	0.24480309194597427	No Hit
TAACAATGGTCTTTTGGAAAGGACGAAACACCGCCAGTAGGTCCACTATG	16633	0.22210275614124203	No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCGCCTGTAGGTCCACTATG	11453	0.152933497630352	No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCACCAGTAGGTCCACTATG	10404	0.13892605512496134	No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCGCAGTAGGTCCACTATGA	9177	0.12254175392942812	No Hit
TAACAATGGTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCACTATGA	8030	0.1072257038305882	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AATGGTC	744010	144.92047	5
CAATGGT	743280	144.91158	4
ACAATGG	743200	144.89691	3
AACAATG	744370	144.89229	2
TAACAAT	744280	144.88715	1
ATGGTCT	744770	144.8096	6
GGTCTTG	740585	144.75237	8
TGGTCTT	745010	144.67296	7
GTCTTGT	742360	144.44336	9
CTGAACA	18265	133.23187	145
CTGAACT	701550	129.2612	145
CGTATGC	2955	113.088875	145
TGAACTC	76805	105.69787	145
CTGAACC	2170	92.19891	145
GGTCTTT	4830	90.499596	8
CTAACTC	2175	90.32053	145
CGAACTC	1915	85.92777	145
CAGAACA	2105	77.82745	145
CAGAACT	3305	75.67007	145
CAATGAT	1515	74.20255	4