HH7JLAFX2_n01_0909_CD4_prestim.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH7JLAFX2_n01_0909_CD4_prestim.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7085245
Sequences flagged as poor quality	0
Sequence length	151
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCA	6607352	93.2550956247808	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCCCCAGTAGGTCCA	23305	0.3289229941942728	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACAGCCAGTAGGTCCA	21606	0.3049435834611224	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCTCCAGTAGGTCCA	19354	0.27315922032336215	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCACCAGTAGGTCCA	13048	0.1841573580024403	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCAC	10717	0.1512580016640215	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCAGTAGGTCCAC	9354	0.13202084049316573	No Hit
ATCTATTCCTTGGTTCTTGTGGAAAGGACGAAACACCGCCAGTAGGTCCA	7552	0.10658770444776433	No Hit
ATCGATTCCTTGGTTCTTGTGGAAAGGACAAAACACCGCCAGTAGGTCCA	7171	0.10121033217623385	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATCGATT	704160	144.93256	1
CGATTCC	704270	144.89684	3
TCGATTC	704625	144.88557	2
ATTCCTT	705330	144.87135	5
GATTCCT	704745	144.864	4
TTCCTTG	705060	144.81883	6
CCTTGGT	704360	144.74086	8
TCCTTGG	704695	144.71011	7
CTTGGTT	704455	144.64313	9
TCTGAAC	667780	134.39622	145
TCTGAAA	13985	129.4331	145
CTGAACT	48225	121.41356	145
TCAGAAC	3295	96.5825	145
CTGAACA	2245	87.50689	145
TCTGACC	1875	85.443756	145
TGAACTC	7750	78.38476	145
ACTGAAC	1925	75.31623	145
CCTTAGT	975	72.863625	8
CAATTCC	1280	71.959045	3
CTATTCC	1495	70.82773	3