HH7CGAFX2_n02_ncm10-9.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH7CGAFX2_n02_ncm10-9.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	5448808
Sequences flagged as poor quality	0
Sequence length	76
%GC	40

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	129767	2.381566757353168	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	25766	0.47287406713541746	No Hit
GGTGTTGTATTACGGGCTCGAGTAATACCGGAGTGTCTTGACAATCCTAA	8534	0.15662141150871897	No Hit
GAGGTACTTCATGCGAAAGCAGTTGAAGACAAGTTCGAAAAGAGTTTGGA	6617	0.12143940472852044	No Hit
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	6597	0.12107235197129354	Illumina Single End PCR Primer 1 (98% over 50bp)
GGAGGTACTTCATGCGAAAGCAGTTGAAGACAAGTTCGAAAAGAGTTTGG	6382	0.11712653483110436	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	6100	0.11195109095420504	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	23700	47.53056	49
CGCCGTA	26640	47.13076	47
TCGCCGT	26665	46.773243	46
CGTATCA	24200	46.73657	50
GTATCAT	23610	45.532238	51
GTGACTG	2650	45.07947	1
GCCGTAT	27770	44.874676	48
GTCGCCG	28540	44.644775	45
GGTCGGA	1555	44.56954	2
GGTCGCC	28955	44.488472	44
CTCGGTG	25935	44.172005	38
GTGGTCG	29340	43.80925	42
GATCTCG	25445	43.784214	35
TCTCGGT	25810	43.72143	37
ATCTCGG	26070	43.32527	36
GGTGGTC	30055	43.26785	41
TGGTCGC	29695	43.226574	43
GACTGGA	3205	42.80255	3
AGATCTC	26480	42.24469	34
TATCATT	25790	42.239956	52