HH7CGAFX2_n02_ncm10-6.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH7CGAFX2_n02_ncm10-6.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6746336
Sequences flagged as poor quality	0
Sequence length	76
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	350959	5.202216432742158	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	57627	0.8541970041219411	No Hit
AGGTCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	17447	0.25861445383093873	Illumina Single End PCR Primer 1 (98% over 50bp)
GGTGTTGTATTACGGGCTCGAGTAATACCGGAGTGTCTTGACAATCCTAA	11896	0.1763327530677393	No Hit
GTGACTGGAGTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATC	8494	0.12590538034275198	Illumina Single End PCR Primer 1 (100% over 38bp)
AGATCGGAAGAGCGTCGTGGAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	8170	0.12110277341656271	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGACTG	8060	60.198433	1
TGACTGG	8100	59.24508	2
GACTGGA	9360	56.636307	3
ACTGGAG	9770	53.172096	4
CCGTATC	62295	52.93013	49
GTATCAT	61510	52.16084	51
CGTATCA	64160	51.926266	50
CGCCGTA	67105	51.541702	47
TCGCCGT	66710	51.18689	46
GATCGAG	3605	50.841686	8
TATCATT	63825	50.27439	52
CATTAAA	69045	49.658703	55
ATCATTA	67175	49.325417	53
GGTCGGA	3330	49.2979	2
TCATTAA	68415	48.830887	54
GCCGTAT	71625	48.427002	48
GTCGCCG	75440	48.13566	45
TGGTCGC	74205	48.120705	43
GGTCGCC	75830	48.09121	44
GATCTCG	71345	47.77276	35