HH7CGAFX2_n02_ncm10-12.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH7CGAFX2_n02_ncm10-12.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	6758862
Sequences flagged as poor quality	0
Sequence length	76
%GC	41

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATCTCGGTGGTCGCC	161928	2.395787929979929	Illumina Single End PCR Primer 1 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	31106	0.46022540480927115	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGATATCGGTGGTCGCC	7713	0.11411684393023559	Illumina Single End PCR Primer 1 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CCGTATC	29100	47.78018	49
CGCCGTA	32655	47.132347	47
TCGCCGT	33015	46.47066	46
CGTATCA	29960	46.46708	50
GTATCAT	29475	45.438366	51
GTGACTG	3695	45.220757	1
GCCGTAT	33760	45.051167	48
GTCGCCG	35005	44.788826	45
CTCGGTG	31245	44.78734	38
GGTCGCC	35570	44.63832	44
GATCTCG	30750	44.46109	35
TCTCGGT	31135	44.383472	37
ATCTCGG	31450	44.105873	36
GTGGTCG	35965	43.99234	42
TGACTGG	3870	43.504112	2
GGTCGGA	1605	43.398453	2
GGTGGTC	36825	43.3832	41
TGGTCGC	36605	43.10843	43
TCGGTGG	35550	42.858685	39
AGATCTC	32120	42.673683	34