FastQCFastQC Report
Thu 11 May 2023
HH35LBGXT_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHH35LBGXT_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56855508
Sequences flagged as poor quality0
Sequence length15
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAA38158716.711523886129027No Hit
CAAAAAAAAAAAAAA20245373.5608458550752906No Hit
CAAGTATGCAGCGCG8114591.427230234228142No Hit
CCAAAAAAAAAAAAA4631340.8145807086975636No Hit
TAAAAAAAAAAAAAA3418590.6012768367138677No Hit
ACAAAAAAAAAAAAA2567320.4515516772798864No Hit
GAAAAAAAAAAAAAA2355550.41430462638729737No Hit
AAGTATGCAGCGCGC1205400.21201112124440083No Hit
ACCAAAAAAAAAAAA1072550.1886448714872093No Hit
CCCAAAAAAAAAAAA993020.17465678083467304No Hit
TCAAAAAAAAAAAAA870270.1530669640661728No Hit
CTAAAAAAAAAAAAA727020.12787151598399227No Hit
GCAAAAAAAAAAAAA694990.12223793691193473No Hit
CGAAAAAAAAAAAAA586810.10321075664296236No Hit
AAAGTATGCAGCGCG582730.10249314806931283No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)