HH2TCBGX7_n01_5000_062_1_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH2TCBGX7_n01_5000_062_1_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	7889146
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCCTTTATCTCGTAT	24590	0.3116940667595707	TruSeq Adapter, Index 27 (97% over 44bp)
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAAC	11575	0.14672057026197766	No Hit
GCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAAC	9504	0.12046931315506139	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTA	9081	0.11510751607334939	No Hit
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA	8997	0.11404276204293848	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATA	8446	0.10705848262917178	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA	8140	0.1031797358041035	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	2935	60.218704	44
TATGCCG	3085	59.9019	48
TCGTATG	3140	58.517166	45
GTATGCC	3250	56.53694	47
AGTCACA	3395	55.46278	28
CGTATGC	3390	54.614704	46
TTATCTC	3240	54.33358	40
ACATTCC	3450	53.96888	32
CAGTCAC	3520	53.39379	27
GTCACAT	3525	53.218422	29
ATGCCGT	3485	52.92608	49
ACGTCTG	3595	52.864002	15
CACGTCT	3660	52.21171	14
ACACGTC	3795	50.999947	13
GTCTGAA	3790	50.142815	17
CACATTC	3745	49.717342	31
GCCGTCT	3760	48.31079	51
CTGAACT	4010	47.65367	19
TGCCGTC	3995	45.994633	50
CCGTCTT	3950	45.986687	52