HH2TCBGX7_n01_2500_125_1_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH2TCBGX7_n01_2500_125_1_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15596891
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCATTTTATCTCGTATGC	31514	0.2020530886572202	TruSeq Adapter, Index 9 (97% over 36bp)
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAAC	23829	0.15278044835986865	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTA	20553	0.13177626233330733	No Hit
GCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAAC	18326	0.11749777567849899	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATA	17462	0.11195821013303228	No Hit
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA	16996	0.10897043519763008	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	5100	53.52616	46
TCGTATG	5215	52.412254	43
CTCGTAT	5085	51.96275	42
GTATGCC	5295	51.951183	45
CGTATGC	5315	51.623672	44
ACGTCTG	6035	48.657528	15
CACGTCT	6195	47.62682	14
CAGTCAC	6235	46.478218	27
AGTCACC	6275	46.014473	28
ACACGTC	6425	45.867565	13
CATTTTA	6360	45.564877	34
TTATCTC	5955	44.431835	38
GTCTGAA	6785	43.17364	17
ATGCCGT	6460	42.095238	47
ACCATTT	7270	40.05387	32
AGCACAC	7615	39.25199	10
ATTTTAT	7595	38.15583	35
CTGAACT	7895	37.635582	19
CCGTCTT	7225	37.542297	50
GCCGTCT	7250	37.02664	49