HH2TCBGX7_n01_2500_062_1_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH2TCBGX7_n01_2500_062_1_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10875829
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAAC	16841	0.15484796607228746	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATGAGCATCTCGTATGC	16193	0.14888979957297968	TruSeq Adapter, Index 1 (97% over 37bp)
GCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAAC	13871	0.12753970295046013	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTA	12877	0.11840016977096642	No Hit
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA	12171	0.11190871059116506	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATA	12014	0.11046514247327721	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCA	11122	0.1022634688353412	No Hit
TCCAGCTCCAATAGCGTATATTTAAGTTGTTGCAGTTAAAAAGCTCGTAG	11038	0.10149111391876425	No Hit
GAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCG	11011	0.10124285698129311	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2585	54.96857	46
CTCGTAT	2405	52.97065	42
TCGTATG	2595	50.980186	43
GTATGCC	2855	50.750603	45
GTCACAT	3535	48.61329	29
AGTCACA	3540	48.445988	28
CGTATGC	3005	47.867897	44
ACGTCTG	3640	47.59538	15
CAGTCAC	3645	46.762356	27
CACGTCT	3695	46.697266	14
ACACGTC	3875	44.889385	13
GTCTGAA	3930	44.25974	17
ATGCCGT	3385	40.219433	47
CTGAACT	4420	39.74884	19
CACATGA	4385	39.50778	31
AGCACAC	4450	39.1679	10
TGAACTC	4560	37.9914	20
ACATGAG	4630	37.493988	32
TGAGCAT	4595	35.646534	35
CATCTCG	3795	35.228535	39