HH2TCBGX7_n01_2500_031_1_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH2TCBGX7_n01_2500_031_1_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9936717
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	42458	0.4272839812183441	No Hit
TGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	17436	0.17547042951912586	No Hit
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAAC	13890	0.13978459887707378	No Hit
GCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAAC	11746	0.11820805604104453	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTAT	11688	0.11762436225163703	TruSeq Adapter, Index 18 (97% over 40bp)
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATA	11057	0.11127417637032432	No Hit
CCCGACTGTCCCTATTAATCATTACTCCGATCCCGAAGGCCAACACAATA	10410	0.10476297151262334	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTA	10143	0.10207596734414395	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	2200	40.88558	48
TCGTATG	2415	38.113873	45
CTCGTAT	2350	36.636124	44
CGTATGC	2505	36.46527	46
GTATGCC	2505	36.32592	47
CGCACAT	3220	28.15121	37
ATGCCGT	3325	27.683819	49
TGGGGGG	4885	27.376413	1
AGTCACG	3425	26.773617	28
CCGCACA	3445	26.109411	36
ACGTCCG	3600	25.374388	32
CCGTCTT	3805	23.8237	52
GTCACGT	3885	23.78357	29
GTCCGCA	4080	23.07519	34
GCCGTCT	4045	22.237242	51
CAGTCAC	4310	21.60084	27
GCCAGTA	3450	21.51268	1
TCACGTC	4355	21.296309	30
CATGCGT	2120	20.968267	5
TCTCGTA	4080	20.93013	43