Sample	adapter_content	Sequences flagged as poor quality	sequence_duplication_levels	avg_sequence_length	Encoding	kmer_content	per_base_sequence_quality	sequence_length_distribution	Sequence length	File type	basic_statistics	per_sequence_gc_content	Total Sequences	per_base_n_content	per_base_sequence_content	overrepresented_sequences	%GC	total_deduplicated_percentage	Filename	per_tile_sequence_quality	per_sequence_quality_scores
HH2JLAFX2_n01_msh3_MA_strain_A1	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4333548.0	pass	fail	warn	37.0	39.8416297606	HH2JLAFX2_n01_msh3_MA_strain_A1.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_A11	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4481714.0	pass	fail	warn	37.0	42.7939558811	HH2JLAFX2_n01_msh3_MA_strain_A11.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_A2	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4857895.0	pass	fail	warn	37.0	36.7587944934	HH2JLAFX2_n01_msh3_MA_strain_A2.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_A3	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4915237.0	pass	fail	warn	36.0	41.5762314349	HH2JLAFX2_n01_msh3_MA_strain_A3.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_A4	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	fail	7637998.0	pass	fail	warn	36.0	27.3251890981	HH2JLAFX2_n01_msh3_MA_strain_A4.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_A5	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	3290900.0	pass	fail	warn	37.0	44.1705235176	HH2JLAFX2_n01_msh3_MA_strain_A5.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_A6	pass	0.0	warn	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	1982907.0	pass	fail	warn	37.0	57.6400174285	HH2JLAFX2_n01_msh3_MA_strain_A6.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_A7	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	6165830.0	pass	fail	warn	37.0	39.9476554337	HH2JLAFX2_n01_msh3_MA_strain_A7.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_A8	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	2742438.0	pass	fail	warn	38.0	47.1837765222	HH2JLAFX2_n01_msh3_MA_strain_A8.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_A9	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	6899121.0	pass	fail	warn	37.0	42.7698983625	HH2JLAFX2_n01_msh3_MA_strain_A9.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_B1	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	pass	3748104.0	pass	fail	warn	38.0	45.140612293	HH2JLAFX2_n01_msh3_MA_strain_B1.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_B2	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	5115281.0	pass	fail	warn	38.0	31.8807109095	HH2JLAFX2_n01_msh3_MA_strain_B2.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_C1	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	3930322.0	pass	fail	warn	37.0	46.3174364808	HH2JLAFX2_n01_msh3_MA_strain_C1.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_C2	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	6973891.0	pass	fail	warn	37.0	37.2533708993	HH2JLAFX2_n01_msh3_MA_strain_C2.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_D1	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	pass	5749198.0	pass	fail	warn	38.0	37.9495400432	HH2JLAFX2_n01_msh3_MA_strain_D1.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_D2	warn	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	2573692.0	pass	fail	warn	38.0	44.0163150378	HH2JLAFX2_n01_msh3_MA_strain_D2.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_s.EP026.2A-2C	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	pass	8760606.0	pass	fail	pass	37.0	49.5052659073	HH2JLAFX2_n01_msh3_MA_strain_s.EP026.2A-2C.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_s.EP049	warn	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	7491862.0	pass	fail	warn	36.0	39.6658867095	HH2JLAFX2_n01_msh3_MA_strain_s.EP049.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_s.EP050	warn	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	13168842.0	pass	fail	warn	38.0	22.7499366704	HH2JLAFX2_n01_msh3_MA_strain_s.EP050.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_s.EP060.3	warn	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4607292.0	pass	fail	warn	37.0	48.3763261707	HH2JLAFX2_n01_msh3_MA_strain_s.EP060.3.fastq.gz	pass	pass
HH2JLAFX2_n01_msh3_MA_strain_s.EP062.2	warn	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	3890260.0	pass	fail	warn	37.0	46.324263872	HH2JLAFX2_n01_msh3_MA_strain_s.EP062.2.fastq.gz	pass	pass
HH2JLAFX2_n01_undetermined	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	fail	11350155.0	pass	pass	fail	43.0	20.1654272294	HH2JLAFX2_n01_undetermined.fastq.gz	warn	pass
HH2JLAFX2_n02_msh3_MA_strain_A1	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4333548.0	pass	fail	warn	37.0	41.6731029638	HH2JLAFX2_n02_msh3_MA_strain_A1.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_A11	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4481714.0	pass	fail	warn	37.0	44.4759562649	HH2JLAFX2_n02_msh3_MA_strain_A11.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_A2	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4857895.0	pass	fail	warn	37.0	38.753837158	HH2JLAFX2_n02_msh3_MA_strain_A2.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_A3	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4915237.0	pass	fail	warn	37.0	44.122202166	HH2JLAFX2_n02_msh3_MA_strain_A3.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_A4	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	fail	7637998.0	pass	fail	warn	36.0	28.4973858347	HH2JLAFX2_n02_msh3_MA_strain_A4.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_A5	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	3290900.0	pass	fail	warn	37.0	46.1100095544	HH2JLAFX2_n02_msh3_MA_strain_A5.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_A6	pass	0.0	warn	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	1982907.0	pass	fail	warn	37.0	59.1329409039	HH2JLAFX2_n02_msh3_MA_strain_A6.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_A7	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	6165830.0	pass	fail	warn	37.0	41.5882465502	HH2JLAFX2_n02_msh3_MA_strain_A7.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_A8	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	2742438.0	pass	fail	warn	38.0	49.1416419583	HH2JLAFX2_n02_msh3_MA_strain_A8.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_A9	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	6899121.0	pass	fail	warn	37.0	43.9615952312	HH2JLAFX2_n02_msh3_MA_strain_A9.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_B1	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	3748104.0	pass	fail	warn	38.0	46.5324826704	HH2JLAFX2_n02_msh3_MA_strain_B1.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_B2	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	5115281.0	pass	fail	warn	38.0	33.3555665147	HH2JLAFX2_n02_msh3_MA_strain_B2.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_C1	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	3930322.0	pass	fail	warn	37.0	48.2065250975	HH2JLAFX2_n02_msh3_MA_strain_C1.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_C2	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	6973891.0	pass	fail	warn	37.0	38.4034374683	HH2JLAFX2_n02_msh3_MA_strain_C2.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_D1	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	pass	5749198.0	pass	fail	warn	38.0	39.2211800034	HH2JLAFX2_n02_msh3_MA_strain_D1.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_D2	warn	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	2573692.0	pass	fail	warn	38.0	46.2399598871	HH2JLAFX2_n02_msh3_MA_strain_D2.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_s.EP026.2A-2C	pass	0.0	warn	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	pass	8760606.0	pass	fail	pass	37.0	50.6526088214	HH2JLAFX2_n02_msh3_MA_strain_s.EP026.2A-2C.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_s.EP049	warn	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	7491862.0	pass	fail	warn	36.0	41.6414780216	HH2JLAFX2_n02_msh3_MA_strain_s.EP049.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_s.EP050	warn	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	13168842.0	pass	fail	warn	38.0	24.9772345647	HH2JLAFX2_n02_msh3_MA_strain_s.EP050.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_s.EP060.3	warn	0.0	warn	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	4607292.0	pass	fail	warn	37.0	50.3648864818	HH2JLAFX2_n02_msh3_MA_strain_s.EP060.3.fastq.gz	pass	pass
HH2JLAFX2_n02_msh3_MA_strain_s.EP062.2	warn	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	warn	3890260.0	pass	fail	warn	37.0	49.2020646151	HH2JLAFX2_n02_msh3_MA_strain_s.EP062.2.fastq.gz	pass	pass
HH2JLAFX2_n02_undetermined	pass	0.0	fail	151.0	Sanger / Illumina 1.9	fail	pass	pass	151.0	Conventional base calls	pass	fail	11350155.0	pass	pass	fail	46.0	23.7347435123	HH2JLAFX2_n02_undetermined.fastq.gz	warn	pass