HH2GLBGXG_n01_AKM115.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HH2GLBGXG_n01_AKM115.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	19633316
Sequences flagged as poor quality	0
Sequence length	76
%GC	48

Per base quality graph

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC	440219	2.2422040168863986	TruSeq Adapter, Index 2 (100% over 50bp)
GTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCAAGCG	31701	0.16146533779622352	No Hit
GTCAAACTCCCCGCTTGACACTGTCTTCGAGGAGAGTCACGGTGCCATAA	24144	0.12297464167540521	No Hit
GCAAGTGATTTAGCGCCCCGACATTGAACCAGAGTGATCTGGCGTTGGCA	22686	0.11554848910902264	No Hit
GGCGCTTGCTGAATTGGAATAGATCTTCCTTGAATCGCTTCCTTCTTTGG	22603	0.11512573831134792	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	46485	68.1464	46
ATGCCGT	46855	67.31712	47
TATCTCG	49120	65.24536	39
GTATGCC	49850	64.23424	45
TGCCGTC	49195	63.731277	48
CGTATGC	50980	62.85835	44
GTCACCG	52540	62.283184	29
TCACCGA	52620	62.10836	30
GCCGTCT	50535	61.8476	49
CTCGTAT	52005	61.490784	42
AGTCACC	53725	61.026676	28
TGTATCT	53290	60.42882	37
GTATCTC	53730	59.914265	38
AAAAGGG	50665	59.62727	70
CACCGAT	55025	59.495995	31
ACCGATG	54980	59.302635	32
ATGTATC	54925	59.063137	36
TCGTATG	54365	59.04108	43
TCTCGTA	55215	57.89087	41
GATGTAT	57435	57.419968	35