FastQCFastQC Report
Sat 1 Sep 2018
HH2GFBGX7_n01_8_tga1_col_h3k27ac.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHH2GFBGX7_n01_8_tga1_col_h3k27ac.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17884164
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGGGGGG30500.010.6710071
CGTATGC19300.08.70871646
AGCGGCC13850.08.33506920
ACGTCTG273900.08.30907470
CGTCTGA252000.08.11416170
TATGCCG19250.08.00408348
ACACGTC356850.07.68258570
TCTGAAC225400.07.65815870
CTCCAGT114400.07.65147870
GCACACG429300.07.642052770
CACACGT400850.07.538070770
CACGTCT355550.07.4447970
GTCTGAA263800.07.167212570
CTGAACT189450.07.133850670
AGCACAC501250.07.11788770
ACTCCAG121900.07.09430769
CGTTTCG44950.07.085459733
GGGGGTG17800.06.87948943
GCGCGAC11251.3418685E-86.846826663
TGGGGGG26800.06.790331
Produced by FastQC (version 0.11.2)