FastQCFastQC Report
Sat 1 Sep 2018
HH2GFBGX7_n01_10_bzip1_col_h3k27ac.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHH2GFBGX7_n01_10_bzip1_col_h3k27ac.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21806005
Sequences flagged as poor quality0
Sequence length76
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[WARN]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTCACG136700.08.63188770
TATGCCG25200.08.61634948
AGGGGGG38900.08.2767611
CGTATGC26400.08.09176246
ACTCCAG268400.07.73600370
GTATGCC29100.07.582033647
ATGCCGT31800.07.04829449
TCTGAAC469000.07.02524170
CAGTCAC186050.06.88804370
CTGAACT421250.06.865695570
TGGGGGG24350.06.75493341
CTCCAGT260650.06.730145570
ACGTCTG584400.06.722441770
GTCACGA128150.06.721418470
CGTCTGA541250.06.708497570
GAACTCC368150.06.69564370
GTCTGAA538500.06.65822870
GCCGTCT33800.06.630930451
TGAACTC433400.06.56819570
TCACGAG113900.06.517132370
Produced by FastQC (version 0.11.2)