FastQCFastQC Report
Wed 30 Jan 2019
HGYGTBGX9_n01_Yen001-ADT.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGYGTBGX9_n01_Yen001-ADT.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26845729
Sequences flagged as poor quality0
Sequence length26
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ATAGACC691500.019.703841
TAGACCG668100.019.6353032
CATGGTG1110600.019.624742
GACCGTG662250.019.5796244
CCGTGGA564250.019.5608631
AGACCGT670350.019.5593913
ATGGTGT1116900.019.5452253
ACATGGT1155050.019.5148351
CGTGAGA413850.019.46797410
CGTGGAT540450.019.4209962
ACTGAAC281550.019.4071671
GAATAGT538550.019.3948042
ACCGTGT668650.019.3728495
AATAGTC539100.019.3498553
GGTGTAA1111350.019.3360185
GTGGATC541950.019.3348273
GTCGCTG692050.019.33199110
CGTGTCG678700.019.3050237
TGGATCC539050.019.2903944
GTGAGGA275200.019.2643322
Produced by FastQC (version 0.11.5)