FastQCFastQC Report
Mon 28 Jan 2019
HGYGMBGX9_n01_S_221.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGYGMBGX9_n01_S_221.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GACACTTATTGTATAGTATTTATTGCAGGGGGAATGACAAGGGAAGCTGG12.1739130434782608No Hit
ATTAGGGCCTGGGAACGGTGGCTCACGCCTTTTAATCCCCGCATTTTGGG12.1739130434782608No Hit
CTCCCCAGTAGCTGCGCCTACAGGCACCCGCCCCAACACCTCGCTAATTT12.1739130434782608No Hit
ATGGGTCAATGTTTTACTCACGCTCTAGTCTTTTAACTATCTATAAAAAC12.1739130434782608No Hit
TTTCTAAGTAATACTTTATATTTATTAAAGCATATCTTCTTAATACTCTT12.1739130434782608No Hit
TTGCAAATCTCCAGAATAAAAAGCTGAGCATTTGTAAAAAATAAAAAAAA12.1739130434782608No Hit
GGAGGAGTAAAAGCATTAAGAATAGGATCAGGAACAGGGGATCCTGCAAT12.1739130434782608No Hit
GGAGCACGGTTTTATCACTGTTAATCTAACACTTCTGAGTTATAACATTC12.1739130434782608No Hit
GCTGGATCCCAGAGCGCCTCCATGGGCTTTTGCTCCTAGCTCTGTAGCCA12.1739130434782608No Hit
TTAACATCCCTTGTAAGTTGTATTCTAATGTATTTTATTCGCTTGGTCGC12.1739130434782608No Hit
GAGACTAGGGTTTGCAACGGATGTAAGTTAGACATTTGATTTCGGTTGAC12.1739130434782608No Hit
CCGTTGTATTGTGGAATATATTTTGTTTTTCGTTTGGCTTATAGTCACTC12.1739130434782608No Hit
GCAGGATGGAAGAACTGCGAACGGCCTTTATAATTTTATTAGAGCTGTAG12.1739130434782608No Hit
ATTAATCTATCTATTTACACAAGCGAAAGAAATGTTCATTTAGTAACGTC12.1739130434782608No Hit
GGTGAATCCCAACTCCATAGTAATCTAGCCTTAGTGATTCTCACAAAATT12.1739130434782608No Hit
CAGCAACTCAGAAAAGGCAGCAGATCAGATGGGCTGGAGCCAGCCCGTTG12.1739130434782608No Hit
AATTAGCGAGGCATGGTTGCATGCACCTGTGGTCCCAGTTACTCAGGAGG12.1739130434782608No Hit
CGCCTGTCGTACAAGCTACTCAGGAATCTGAGGCAGGAGAATCACTTGCA12.1739130434782608No Hit
GGTGGGCACCATAGATAAGTGACACTATCATTGATCTGCTCGTTTTTTGC12.1739130434782608No Hit
GGTATGACCGATCTATACAAAAGCTCTTGGCGTGCATCAAAACAGTTGTA12.1739130434782608No Hit
GTGCAGAGATAAATGTAAATGAAAATTTATGCAGATCCTGGTAAAGTGTT12.1739130434782608No Hit
GCGTAACTCGAGCTCCCACGAACTGGATGGACCGGCTCAGTTCTGTACCC12.1739130434782608No Hit
GTCTACAAGATCCGGAAAAAATTAAGTAGTAAATAAAGTTACATGACTCT12.1739130434782608No Hit
CAAATTTTGTGATATGTGTACTGTGTACTTTGATTTTAGGTTATGTTTGC12.1739130434782608No Hit
GGCTCATCAATGTCCGGCGCTTGTGTTAGGGGGACAAAGTGGGGAAGTGC12.1739130434782608No Hit
GGCCACAGGTCACTCTGGGGGTTGCAGCCTTCCTGCAAGAAAACACAGGA12.1739130434782608No Hit
CTTGTAATTCTTACAGGAATGAGGATTAGAAATTACCCAAAACGCAAAGC12.1739130434782608No Hit
GGGCCCAAAAGGGAAATGGCTAGTAGTGAAAACGGGCTCGGATTGGGGCC12.1739130434782608No Hit
GTTCTGATAAAGTAAAATGGAAATGGACCATGTCACTCATCACTCCTCCC12.1739130434782608No Hit
TGGAGGTGGCGGAATGGGTAAAAGAGACAGTACTAAAAAGATCTAGCTTT12.1739130434782608No Hit
GTCGTTGGTGAGTTGCAGCAGAAGAATCTATCTCACTGATTAACAAGAGA12.1739130434782608No Hit
TATATTTATTTAAAATAATCCGCTATTGGTTAGAAAATGTCTTTCAGAGG12.1739130434782608No Hit
GGGTTAAATACTACTGTTTTGCTTTTTCTTTGATTTTTTTTTTGTTGAGT12.1739130434782608No Hit
GAAGGGACTAGAATGAAATCATCGAATGGACTATAATGGAATCCTCATCA12.1739130434782608No Hit
CGGTTTAGTCTCCGCTTAAAAGGGATCACAAACCGTAGTTTGTGTTCTTT12.1739130434782608No Hit
CAAGATAGGATTACATAGTTTATATTACTTGTGACATTCTCCAATCATAA12.1739130434782608No Hit
GGGGCTCTACTGTTTATCCGATACTGGTGTATCAGATACTGCAGTGAAAC12.1739130434782608No Hit
GCCATCATCCCATGTAGAAAATACTTCATTTTCGGATCAGAAACATAAAG12.1739130434782608No Hit
ATTTATATTAGAATAAGTAAAGGATATCATATTAAAAACAACCACGAAGA12.1739130434782608No Hit
GAAGTATTCTTTATAGAATAATAGGAATAAATCACGTTTCCCAAGCAGTA12.1739130434782608No Hit
GGTATAGAATTATTTCAGTGAGTCAGGAATTTACTTCATTAGAGGAGTGA12.1739130434782608No Hit
GGGGTAAGTGCGATAAAGGGAATCACCAAATAAATATTTCTATGTAACAT12.1739130434782608No Hit
GTGATATGATTCAATACCACCTCAACTGGAGGAACCAGCATACTTCGACA12.1739130434782608No Hit
GGGGGGGGCGTTGGTCACGTCTGAAATGCTTGGGAGCACAGACTTGGGGT12.1739130434782608No Hit
CAACTAAAGCGCAGGATATGAGAGGGTTCTCAATCATAGCTGTCTGCCAG12.1739130434782608No Hit
ATTAACAACACGTAAATTTCATTTAAAAAACAAAAAAAAAACAAGTGTGG12.1739130434782608No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)