[2024-10-31 12:02:30,295] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2024-10-31 12:02:30,295] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2024-10-31 12:02:30,295] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2024-10-31 12:02:30,297] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml [2024-10-31 12:02:30,298] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2024-10-31 12:02:30,298] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-31 12:02:30,341] multiqc [DEBUG ] Could not connect to multiqc.info for version check: [2024-10-31 12:02:30,341] multiqc [INFO ] This is MultiQC v1.9 [2024-10-31 12:02:30,341] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/GENEFLOW/bin/mqc_config.yaml . [2024-10-31 12:02:30,341] multiqc [DEBUG ] Working dir : /scratch/gencore/GENEFLOW/work/nf/28/f692c7269591ab9a36e91e3618db61/merged [2024-10-31 12:02:30,341] multiqc [INFO ] Template : default [2024-10-31 12:02:30,341] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2024-10-31 12:02:30,341] multiqc [INFO ] Searching : /scratch/gencore/GENEFLOW/work/nf/28/f692c7269591ab9a36e91e3618db61/merged [2024-10-31 12:02:30,341] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2024-10-31 12:02:30,341] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-52866406/tmphyyf05vi [2024-10-31 12:02:30,445] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_39_fastqc.html [2024-10-31 12:02:30,448] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_39_fastqc.html [2024-10-31 12:02:30,496] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_28_fastqc.html [2024-10-31 12:02:30,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_28_fastqc.html [2024-10-31 12:02:30,548] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_19_fastqc.html [2024-10-31 12:02:30,550] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_19_fastqc.html [2024-10-31 12:02:30,594] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_15_fastqc.html [2024-10-31 12:02:30,596] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_15_fastqc.html [2024-10-31 12:02:30,640] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_13_fastqc.html [2024-10-31 12:02:30,642] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_13_fastqc.html [2024-10-31 12:02:30,687] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_50_fastqc.html [2024-10-31 12:02:30,689] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_50_fastqc.html [2024-10-31 12:02:30,734] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_29_fastqc.html [2024-10-31 12:02:30,736] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_29_fastqc.html [2024-10-31 12:02:30,781] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_10_fastqc.html [2024-10-31 12:02:30,783] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_10_fastqc.html [2024-10-31 12:02:30,829] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_23_fastqc.html [2024-10-31 12:02:30,831] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_23_fastqc.html [2024-10-31 12:02:30,876] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_20_fastqc.html [2024-10-31 12:02:30,878] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_20_fastqc.html [2024-10-31 12:02:30,923] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_37_fastqc.html [2024-10-31 12:02:30,925] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_37_fastqc.html [2024-10-31 12:02:30,969] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_31_fastqc.html [2024-10-31 12:02:30,971] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_31_fastqc.html [2024-10-31 12:02:31,017] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_undetermined_fastqc.html [2024-10-31 12:02:31,019] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_undetermined_fastqc.html [2024-10-31 12:02:31,063] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_14_fastqc.html [2024-10-31 12:02:31,065] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_14_fastqc.html [2024-10-31 12:02:31,110] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_27_fastqc.html [2024-10-31 12:02:31,112] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_27_fastqc.html [2024-10-31 12:02:31,158] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_43_fastqc.html [2024-10-31 12:02:31,160] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_43_fastqc.html [2024-10-31 12:02:31,205] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_52_fastqc.html [2024-10-31 12:02:31,207] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_52_fastqc.html [2024-10-31 12:02:31,254] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_6_fastqc.html [2024-10-31 12:02:31,256] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_6_fastqc.html [2024-10-31 12:02:31,301] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_8_fastqc.html [2024-10-31 12:02:31,303] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_8_fastqc.html [2024-10-31 12:02:31,348] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_21_fastqc.html [2024-10-31 12:02:31,350] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_21_fastqc.html [2024-10-31 12:02:31,395] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_53_fastqc.html [2024-10-31 12:02:31,397] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_53_fastqc.html [2024-10-31 12:02:31,442] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_18_fastqc.html [2024-10-31 12:02:31,444] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_18_fastqc.html [2024-10-31 12:02:31,489] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_51_fastqc.html [2024-10-31 12:02:31,491] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_51_fastqc.html [2024-10-31 12:02:31,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_30_fastqc.html [2024-10-31 12:02:31,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_30_fastqc.html [2024-10-31 12:02:31,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_17_fastqc.html [2024-10-31 12:02:31,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_17_fastqc.html [2024-10-31 12:02:31,631] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_12_fastqc.html [2024-10-31 12:02:31,633] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_12_fastqc.html [2024-10-31 12:02:31,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_48_fastqc.html [2024-10-31 12:02:31,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_48_fastqc.html [2024-10-31 12:02:31,725] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_45_fastqc.html [2024-10-31 12:02:31,727] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_45_fastqc.html [2024-10-31 12:02:31,772] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_36_fastqc.html [2024-10-31 12:02:31,774] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_36_fastqc.html [2024-10-31 12:02:31,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_42_fastqc.html [2024-10-31 12:02:31,822] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_42_fastqc.html [2024-10-31 12:02:31,867] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_24_fastqc.html [2024-10-31 12:02:31,869] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_24_fastqc.html [2024-10-31 12:02:31,914] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_44_fastqc.html [2024-10-31 12:02:31,915] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_44_fastqc.html [2024-10-31 12:02:31,960] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_16_fastqc.html [2024-10-31 12:02:31,962] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_16_fastqc.html [2024-10-31 12:02:32,007] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_26_fastqc.html [2024-10-31 12:02:32,009] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_26_fastqc.html [2024-10-31 12:02:32,054] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_33_fastqc.html [2024-10-31 12:02:32,056] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_33_fastqc.html [2024-10-31 12:02:32,101] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_9_fastqc.html [2024-10-31 12:02:32,103] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_9_fastqc.html [2024-10-31 12:02:32,151] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_38_fastqc.html [2024-10-31 12:02:32,153] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_38_fastqc.html [2024-10-31 12:02:32,197] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_34_fastqc.html [2024-10-31 12:02:32,199] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_34_fastqc.html [2024-10-31 12:02:32,249] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_49_fastqc.html [2024-10-31 12:02:32,251] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_49_fastqc.html [2024-10-31 12:02:32,296] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_35_fastqc.html [2024-10-31 12:02:32,298] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_35_fastqc.html [2024-10-31 12:02:32,343] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_7_fastqc.html [2024-10-31 12:02:32,345] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_7_fastqc.html [2024-10-31 12:02:32,389] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_4_fastqc.html [2024-10-31 12:02:32,391] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_4_fastqc.html [2024-10-31 12:02:32,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_11_fastqc.html [2024-10-31 12:02:32,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_11_fastqc.html [2024-10-31 12:02:32,481] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_40_fastqc.html [2024-10-31 12:02:32,483] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_40_fastqc.html [2024-10-31 12:02:32,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_2_fastqc.html [2024-10-31 12:02:32,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_2_fastqc.html [2024-10-31 12:02:32,575] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_32_fastqc.html [2024-10-31 12:02:32,577] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_32_fastqc.html [2024-10-31 12:02:32,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_47_fastqc.html [2024-10-31 12:02:32,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_47_fastqc.html [2024-10-31 12:02:32,668] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_46_fastqc.html [2024-10-31 12:02:32,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_46_fastqc.html [2024-10-31 12:02:32,715] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_41_fastqc.html [2024-10-31 12:02:32,717] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_41_fastqc.html [2024-10-31 12:02:32,761] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_5_fastqc.html [2024-10-31 12:02:32,763] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGYFTDRX5_n01_WWY_S_24_5_fastqc.html [2024-10-31 12:02:33,257] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-31 12:02:33,259] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2024-10-31 12:02:33,289] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 50 samples (table) [2024-10-31 12:02:33,290] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2024-10-31 12:02:33,300] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2024-10-31 12:02:33,304] multiqc [DEBUG ] No samples found: conpair [2024-10-31 12:02:33,309] multiqc [DEBUG ] No samples found: peddy [2024-10-31 12:02:33,314] multiqc [DEBUG ] No samples found: somalier [2024-10-31 12:02:33,319] multiqc [DEBUG ] No samples found: methylQA [2024-10-31 12:02:33,326] multiqc [DEBUG ] No samples found: mosdepth [2024-10-31 12:02:33,330] multiqc [DEBUG ] No samples found: phantompeakqualtools [2024-10-31 12:02:33,334] multiqc [DEBUG ] No samples found: qualimap [2024-10-31 12:02:33,338] multiqc [DEBUG ] No samples found: preseq [2024-10-31 12:02:33,343] multiqc [DEBUG ] No samples found: quast [2024-10-31 12:02:33,348] multiqc [DEBUG ] No samples found: qorts [2024-10-31 12:02:33,353] multiqc [DEBUG ] No samples found: rna_seqc [2024-10-31 12:02:33,357] multiqc [DEBUG ] No samples found: rockhopper [2024-10-31 12:02:33,362] multiqc [DEBUG ] No samples found: rsem [2024-10-31 12:02:33,373] multiqc [DEBUG ] No samples found: rseqc [2024-10-31 12:02:33,377] multiqc [DEBUG ] No samples found: busco [2024-10-31 12:02:33,381] multiqc [DEBUG ] No samples found: goleft_indexcov [2024-10-31 12:02:33,386] multiqc [DEBUG ] No samples found: disambiguate [2024-10-31 12:02:33,390] multiqc [DEBUG ] No samples found: supernova [2024-10-31 12:02:33,403] multiqc [DEBUG ] No samples found: deeptools [2024-10-31 12:02:33,407] multiqc [DEBUG ] No samples found: sargasso [2024-10-31 12:02:33,412] multiqc [DEBUG ] No samples found: verifybamid [2024-10-31 12:02:33,416] multiqc [DEBUG ] No samples found: mirtrace [2024-10-31 12:02:33,421] multiqc [DEBUG ] No samples found: happy [2024-10-31 12:02:33,425] multiqc [DEBUG ] No samples found: mirtop [2024-10-31 12:02:33,432] multiqc [DEBUG ] No samples found: homer [2024-10-31 12:02:33,436] multiqc [DEBUG ] No samples found: macs2 [2024-10-31 12:02:33,440] multiqc [DEBUG ] No samples found: theta2 [2024-10-31 12:02:33,445] multiqc [DEBUG ] No samples found: snpeff [2024-10-31 12:02:33,452] multiqc [DEBUG ] No samples found: gatk [2024-10-31 12:02:33,456] multiqc [DEBUG ] No samples found: htseq [2024-10-31 12:02:33,461] multiqc [DEBUG ] No samples found: bcftools [2024-10-31 12:02:33,466] multiqc [DEBUG ] No samples found: featureCounts [2024-10-31 12:02:33,472] multiqc [DEBUG ] No samples found: fgbio [2024-10-31 12:02:33,486] multiqc [DEBUG ] No samples found: dragen [2024-10-31 12:02:33,490] multiqc [DEBUG ] No samples found: dedup [2024-10-31 12:02:33,495] multiqc [DEBUG ] No samples found: damageprofiler [2024-10-31 12:02:33,516] multiqc [DEBUG ] No samples found: biobambam2 [2024-10-31 12:02:33,535] multiqc [DEBUG ] No samples found: mtnucratio [2024-10-31 12:02:33,538] multiqc [DEBUG ] No samples found: picard [2024-10-31 12:02:33,542] multiqc [DEBUG ] No samples found: prokka [2024-10-31 12:02:33,547] multiqc [DEBUG ] No samples found: samblaster [2024-10-31 12:02:33,556] multiqc [DEBUG ] No samples found: samtools [2024-10-31 12:02:33,561] multiqc [DEBUG ] No samples found: sexdeterrmine [2024-10-31 12:02:33,566] multiqc [DEBUG ] No samples found: bamtools [2024-10-31 12:02:33,570] multiqc [DEBUG ] No samples found: jellyfish [2024-10-31 12:02:33,578] multiqc [DEBUG ] No samples found: vcftools [2024-10-31 12:02:33,584] multiqc [DEBUG ] No samples found: longranger [2024-10-31 12:02:33,588] multiqc [DEBUG ] No samples found: stacks [2024-10-31 12:02:33,593] multiqc [DEBUG ] No samples found: varscan2 [2024-10-31 12:02:33,605] multiqc [DEBUG ] No samples found: bbmap [2024-10-31 12:02:33,610] multiqc [DEBUG ] No samples found: bismark [2024-10-31 12:02:33,615] multiqc [DEBUG ] No samples found: biscuit [2024-10-31 12:02:33,619] multiqc [DEBUG ] No samples found: hicexplorer [2024-10-31 12:02:33,624] multiqc [DEBUG ] No samples found: hicup [2024-10-31 12:02:33,629] multiqc [DEBUG ] No samples found: hicpro [2024-10-31 12:02:33,633] multiqc [DEBUG ] No samples found: salmon [2024-10-31 12:02:33,638] multiqc [DEBUG ] No samples found: kallisto [2024-10-31 12:02:33,643] multiqc [DEBUG ] No samples found: slamdunk [2024-10-31 12:02:33,648] multiqc [DEBUG ] No samples found: star [2024-10-31 12:02:33,653] multiqc [DEBUG ] No samples found: hisat2 [2024-10-31 12:02:33,657] multiqc [DEBUG ] No samples found: tophat [2024-10-31 12:02:33,662] multiqc [DEBUG ] No samples found: bowtie2 [2024-10-31 12:02:33,666] multiqc [DEBUG ] No samples found: bowtie1 [2024-10-31 12:02:33,670] multiqc [DEBUG ] No samples found: snpsplit [2024-10-31 12:02:33,674] multiqc [DEBUG ] No samples found: kat [2024-10-31 12:02:33,679] multiqc [DEBUG ] No samples found: leehom [2024-10-31 12:02:33,683] multiqc [DEBUG ] No samples found: adapterRemoval [2024-10-31 12:02:33,687] multiqc [DEBUG ] No samples found: clipandmerge [2024-10-31 12:02:33,694] multiqc [DEBUG ] No samples found: cutadapt [2024-10-31 12:02:33,698] multiqc [DEBUG ] No samples found: flexbar [2024-10-31 12:02:33,703] multiqc [DEBUG ] No samples found: kaiju [2024-10-31 12:02:33,707] multiqc [DEBUG ] No samples found: kraken [2024-10-31 12:02:33,712] multiqc [DEBUG ] No samples found: malt [2024-10-31 12:02:33,716] multiqc [DEBUG ] No samples found: trimmomatic [2024-10-31 12:02:33,720] multiqc [DEBUG ] No samples found: sickle [2024-10-31 12:02:33,725] multiqc [DEBUG ] No samples found: skewer [2024-10-31 12:02:33,729] multiqc [DEBUG ] No samples found: sortmerna [2024-10-31 12:02:33,733] multiqc [DEBUG ] No samples found: biobloomtools [2024-10-31 12:02:33,737] multiqc [DEBUG ] No samples found: fastq_screen [2024-10-31 12:02:33,742] multiqc [DEBUG ] No samples found: afterqc [2024-10-31 12:02:33,746] multiqc [DEBUG ] No samples found: fastp [2024-10-31 12:02:36,984] multiqc.modules.fastqc.fastqc [INFO ] Found 50 reports [2024-10-31 12:02:37,675] multiqc [DEBUG ] No samples found: pycoqc [2024-10-31 12:02:37,679] multiqc [DEBUG ] No samples found: minionqc [2024-10-31 12:02:37,684] multiqc [DEBUG ] No samples found: multivcfanalyzer [2024-10-31 12:02:37,688] multiqc [DEBUG ] No samples found: clusterflow [2024-10-31 12:02:37,693] multiqc [DEBUG ] No samples found: bcl2fastq [2024-10-31 12:02:37,698] multiqc [DEBUG ] No samples found: interop [2024-10-31 12:02:37,702] multiqc [DEBUG ] No samples found: ivar [2024-10-31 12:02:37,706] multiqc [DEBUG ] No samples found: flash [2024-10-31 12:02:37,711] multiqc [DEBUG ] No samples found: seqyclean [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2024-10-31 12:02:37,711] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2024-10-31 12:02:37,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2024-10-31 12:02:37,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2024-10-31 12:02:37,712] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2024-10-31 12:02:37,712] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2024-10-31 12:02:37,712] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2024-10-31 12:02:37,712] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2024-10-31 12:02:37,770] multiqc [INFO ] Compressing plot data [2024-10-31 12:02:38,695] multiqc [INFO ] Report : multiqc_report.html [2024-10-31 12:02:38,695] multiqc [INFO ] Data : multiqc_data [2024-10-31 12:02:38,695] multiqc [DEBUG ] Moving data file from '/state/partition1/job-52866406/tmphyyf05vi/multiqc_data' to '/scratch/gencore/GENEFLOW/work/nf/28/f692c7269591ab9a36e91e3618db61/merged/multiqc_data' [2024-10-31 12:02:38,826] multiqc [INFO ] MultiQC complete