FastQCFastQC Report
Mon 28 Jan 2019
HGY2NBGX9_n01_S_186.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGY2NBGX9_n01_S_186.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18
Sequences flagged as poor quality0
Sequence length151
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGATGGGAAGAGCCTTTGAAATCTGCATTTGGCCTTCTGCTGTCGCAAG15.555555555555555No Hit
GGGGGGGGGGGGGGGGGGCCCTGGCCGGGAGATGTGGCGATTGTTTGTCG15.555555555555555No Hit
AGATAATGCTTTGTTTATATTCACATGAATGGTATCGCTGTTTAAAATGT15.555555555555555No Hit
GCATTATACACTCTGAAAAATAACCCTAGCCCAACATAAAAGAAACCATT15.555555555555555No Hit
GCCTGCATCTGAGCACACAACCCTAGGTAATCTGAACATCCAGATTACAG15.555555555555555No Hit
ATTCTACTACTTTCTTGTATGGTTATTCCTTTTTCACAAAAACAATCATA15.555555555555555No Hit
GGGTAAATACGGGCCCTATTTCAAAGATTTTTAGGGGAATTAATTCTAGG15.555555555555555No Hit
CAAAAGATTTGTTAAAAATAAAAATTGTTCCATCAAGTGATGAATTTACA15.555555555555555No Hit
AGTATATATATATATATATATATACTTATTTTTTATTATTACAGCCCCAC15.555555555555555No Hit
AATTAACAACTTCGGGGACAGATCACACCATTGAAATACATTTTACATGG15.555555555555555No Hit
ATTATATTAATTTATATTAAATTACGTGAGAGTTACTTCAAGTATATGAC15.555555555555555No Hit
TCTCTGTCCTCACTTAGCCGTTCTTAGTAAAAAAACAAGTTCAGACGGGT15.555555555555555No Hit
GTAAGAGGCCAACATCCAGGAAGCTTAGCAGCAGCATAGCACCGGTCTTC15.555555555555555No Hit
CAAAAGGCCTTCCTCTCCTCCATACACAGAATTAAGAGCTTTCTCTCACC15.555555555555555No Hit
CATAGAATACTCGTGATTATATAGTAACAAAAATCTCTAATTGAAGTCTT15.555555555555555No Hit
CAATTTGAGTAAATGCCAGTATTATTAAAGTGTAGTTAATTCTATTCTGA15.555555555555555No Hit
GCGGAGTAATATGTAATTTAAAAATTTAGTAAAGTATATTATTATTAAAA15.555555555555555No Hit
CCCTGGTGTACAGTGACAAGCACTATGTCGCCAGAAGGCACATTAAGGCT15.555555555555555No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)