FastQCFastQC Report
Fri 22 Nov 2024
HGWW3DRX5_n02_G3_5d_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGWW3DRX5_n02_G3_5d_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28113429
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5808072.0659415114392488No Hit
GTTTGGTCAAGTCCTGCAACGAGCGCAACCCCTATCTTTAGTTACTAACA748850.26636736486324736No Hit
GGACAGTGTGTGGTGGGTAGTTTGACTGGGGCGGTCGCCTCCTAAAGGGT563810.20054828601662214No Hit
GTTAAATCCCGGGGCTCAACCCCGGCTCGCTTTGGATACTAGCAAACTAG531760.18914804024795412No Hit
CTTACCCACTCTTGACATCCTTCGCAAAGCTATAGAGATATAGTGGAGGT470830.16747512372112275No Hit
GTTTCTTAAACAGCTAGGATGTTGGCTTAGAAGCAGCCACCGTTTAAAGA457870.16286522714820736No Hit
GGGAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAAT433340.15413985963789759No Hit
GGTTCGTCCACCCAGGGTTAGTCGGGTCCTAAGACGAGGCCGAAAGGCGT423310.150572169620433No Hit
GGGAAGGATAATTTTACCACTAATTGGATTGTGGGGTAAGTAACAACTGG386880.13761394954702966No Hit
GTCAAATCATCATGCCTCTTACGAGTGGGGCCACACACGTGCTACAATGG369010.13125755666446806No Hit
GAAAACTATTGTCAAGGAACTCTGCAAATTCATCCCGTAAGTTCGCAAGA356900.12695000670320222No Hit
CAAAATTGTGTTAAGTGAGAAAGGTTGTGAAGTTTCTTAAACAGCTAGGA348520.1239692248142338No Hit
GAGACGTTGATGCTTGAACGCTAGTTTAAGAGTAGTCGCCGTTGAAATAC329480.11719666071328402No Hit
GTCGGGTCCTAAGACGAGGCCGAAAGGCGTAGCCGATGGACAACAGGTTA327340.1164354586557193No Hit
GTCGGTTCCAAGGGTTGGGCTGTTCGCCCATTAAAGCGGTACGCGAGCTG319730.11372856722671576No Hit
TCTAGAGATACTGCCTGGGTAACTGGGAGGAAGGTGGGGATGACGTCAAA317860.11306340468108673No Hit
GCGAAATTCCTTGTCGGCTAAATACTGACCTGCACGAAAGGAGTAATTAT317730.11301716343459917No Hit
CACACGTGCTACAATGGTCGGTACAAAGAGAAGCAATATGGCGACATGGA312400.11112127232860852No Hit
GAAATTCCTTGTCGGCTAAATACTGACCTGCACGAAAGGAGTAATTATCT310260.11036007027104378No Hit
CGACAATAGACTCGGTGAAATTATGGTTCCGGCGAAGACGCCGGAGACCC301480.10723700762365204No Hit
GAATCACTGACGCAGCTAACGCATTAAATGATCCGCCTGAGTAGTATGCT299610.10657184507802304No Hit
CGGGACTAAAACACAATACCGAAGCTACGGGCAGAAATGCGTTAGGAGAG299330.10647224854712671No Hit
GTTTAAAGAGTGCGTAATAGCTCACTAGTCGAGAGACTTTGTGCCGATAA296930.10561856399658684No Hit
CCGGAGTGGACGCACCGATGGTGTGCCAGTTGTTTCGCCAGAAGCATAGC283350.10078813224811531No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)