[2023-07-14 18:14:55,469] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-07-14 18:14:55,470] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-07-14 18:14:55,470] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-07-14 18:14:55,472] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-07-14 18:14:55,472] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-07-14 18:14:55,472] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HGWL2AFX5/merged [2023-07-14 18:14:56,433] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-07-14 18:14:56,433] multiqc [INFO ] This is MultiQC v1.9 [2023-07-14 18:14:56,433] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HGWL2AFX5/merged [2023-07-14 18:14:56,433] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HGWL2AFX5/merged [2023-07-14 18:14:56,433] multiqc [INFO ] Template : default [2023-07-14 18:14:56,433] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-07-14 18:14:56,433] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HGWL2AFX5/merged [2023-07-14 18:14:56,433] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-07-14 18:14:56,434] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-35402695/tmpnasnpizl [2023-07-14 18:14:56,541] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_undetermined_fastqc.html [2023-07-14 18:14:56,544] multiqc [DEBUG ] File ignored by longranger/invocation because it 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longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac5_fastqc.html [2023-07-14 18:14:56,723] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaLAM_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:14:56,724] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaLAM_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:14:56,767] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-07-14 18:14:56,769] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-07-14 18:14:56,769] multiqc [DEBUG ] File ignored by rockhopper because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-07-14 18:14:56,769] multiqc [DEBUG ] File ignored by rseqc/bam_stat because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-07-14 18:14:56,769] multiqc [DEBUG ] File ignored by rseqc/junction_annotation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-07-14 18:14:56,769] multiqc [DEBUG ] File ignored by rseqc/read_distribution because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-07-14 18:14:56,769] multiqc [DEBUG ] File ignored by rseqc/infer_experiment because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-07-14 18:14:56,769] multiqc [DEBUG ] File ignored by snpeff because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-07-14 18:14:56,769] multiqc [DEBUG ] File ignored by stacks/sumstats because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2023-07-14 18:15:03,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaWRKY45_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:03,240] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaWRKY45_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:03,281] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaWRKY25_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,283] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaWRKY25_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,327] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaWRKY45_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,329] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaWRKY45_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,371] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac4_fastqc.html [2023-07-14 18:15:03,372] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac4_fastqc.html [2023-07-14 18:15:03,411] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac7_fastqc.html [2023-07-14 18:15:03,413] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac7_fastqc.html [2023-07-14 18:15:03,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac5_fastqc.html [2023-07-14 18:15:03,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac5_fastqc.html [2023-07-14 18:15:03,494] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac1_fastqc.html [2023-07-14 18:15:03,496] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac1_fastqc.html [2023-07-14 18:15:03,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaLAM_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaLAM_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,580] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaLAM_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:03,582] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaLAM_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:03,624] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac3_fastqc.html [2023-07-14 18:15:03,625] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac3_fastqc.html [2023-07-14 18:15:03,664] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac6_fastqc.html [2023-07-14 18:15:03,666] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac6_fastqc.html [2023-07-14 18:15:03,707] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac3_fastqc.html [2023-07-14 18:15:03,709] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac3_fastqc.html [2023-07-14 18:15:03,750] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac8_fastqc.html [2023-07-14 18:15:03,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac8_fastqc.html [2023-07-14 18:15:03,793] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaWRKY45_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,795] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaWRKY45_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,838] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaWRKY25_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,840] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaWRKY25_ampFa-B_ac2_a_fastqc.html [2023-07-14 18:15:03,881] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac7_fastqc.html [2023-07-14 18:15:03,883] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac7_fastqc.html [2023-07-14 18:15:03,922] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac4_fastqc.html [2023-07-14 18:15:03,924] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac4_fastqc.html [2023-07-14 18:15:03,965] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac1_fastqc.html [2023-07-14 18:15:03,967] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac1_fastqc.html [2023-07-14 18:15:04,006] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaWRKY25_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:04,008] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_FaWRKY25_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:04,050] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaWRKY25_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:04,052] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaWRKY25_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:04,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac6_fastqc.html [2023-07-14 18:15:04,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac6_fastqc.html [2023-07-14 18:15:04,139] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac2_fastqc.html [2023-07-14 18:15:04,141] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_daplib_AmpPoolHm-input_ac2_fastqc.html [2023-07-14 18:15:04,183] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaWRKY45_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:04,185] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n01_FaWRKY45_ampFa-B_ac1_a_fastqc.html [2023-07-14 18:15:04,229] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac2_fastqc.html [2023-07-14 18:15:04,231] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac2_fastqc.html [2023-07-14 18:15:04,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac8_fastqc.html [2023-07-14 18:15:04,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HGWL2AFX5_n02_daplib_AmpPoolHm-input_ac8_fastqc.html [2023-07-14 18:15:04,608] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-07-14 18:15:04,611] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-07-14 18:15:04,620] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-07-14 18:15:04,627] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 15 samples (table) [2023-07-14 18:15:04,637] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-07-14 18:15:04,646] multiqc [DEBUG ] No samples found: conpair [2023-07-14 18:15:04,650] multiqc [DEBUG ] No samples found: peddy [2023-07-14 18:15:04,655] multiqc [DEBUG ] No samples found: somalier [2023-07-14 18:15:04,660] multiqc [DEBUG ] No samples found: methylQA [2023-07-14 18:15:04,667] multiqc [DEBUG ] No samples found: mosdepth [2023-07-14 18:15:04,672] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-07-14 18:15:04,675] multiqc [DEBUG ] No samples found: qualimap [2023-07-14 18:15:04,692] multiqc [DEBUG ] No samples found: preseq [2023-07-14 18:15:04,697] multiqc [DEBUG ] No samples found: quast [2023-07-14 18:15:04,701] multiqc [DEBUG ] No samples found: qorts [2023-07-14 18:15:04,706] multiqc [DEBUG ] No samples found: rna_seqc [2023-07-14 18:15:04,710] multiqc [DEBUG ] No samples found: rockhopper [2023-07-14 18:15:04,725] multiqc [DEBUG ] No samples found: rsem [2023-07-14 18:15:04,737] multiqc [DEBUG ] No samples found: rseqc [2023-07-14 18:15:04,743] multiqc [DEBUG ] No samples found: busco [2023-07-14 18:15:04,747] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-07-14 18:15:04,756] multiqc [DEBUG ] No samples found: disambiguate [2023-07-14 18:15:04,761] multiqc [DEBUG ] No samples found: supernova [2023-07-14 18:15:04,790] multiqc [DEBUG ] No samples found: deeptools [2023-07-14 18:15:04,794] multiqc [DEBUG ] No samples found: sargasso [2023-07-14 18:15:04,798] multiqc [DEBUG ] No samples found: verifybamid [2023-07-14 18:15:04,802] multiqc [DEBUG ] No samples found: mirtrace [2023-07-14 18:15:04,806] multiqc [DEBUG ] No samples found: happy [2023-07-14 18:15:04,822] multiqc [DEBUG ] No samples found: mirtop [2023-07-14 18:15:04,844] multiqc [DEBUG ] No samples found: homer [2023-07-14 18:15:04,849] multiqc [DEBUG ] No samples found: macs2 [2023-07-14 18:15:04,853] multiqc [DEBUG ] No samples found: theta2 [2023-07-14 18:15:04,857] multiqc [DEBUG ] No samples found: snpeff [2023-07-14 18:15:04,870] multiqc [DEBUG ] No samples found: gatk [2023-07-14 18:15:04,875] multiqc [DEBUG ] No samples found: htseq [2023-07-14 18:15:04,880] multiqc [DEBUG ] No samples found: bcftools [2023-07-14 18:15:04,884] multiqc [DEBUG ] No samples found: featureCounts [2023-07-14 18:15:04,900] multiqc [DEBUG ] No samples found: fgbio [2023-07-14 18:15:04,928] multiqc [DEBUG ] No samples found: dragen [2023-07-14 18:15:04,943] multiqc [DEBUG ] No samples found: dedup [2023-07-14 18:15:04,949] multiqc [DEBUG ] No samples found: damageprofiler [2023-07-14 18:15:05,004] multiqc [DEBUG ] No samples found: biobambam2 [2023-07-14 18:15:05,010] multiqc [DEBUG ] No samples found: mtnucratio [2023-07-14 18:15:05,012] multiqc [DEBUG ] No samples found: picard [2023-07-14 18:15:05,016] multiqc [DEBUG ] No samples found: prokka [2023-07-14 18:15:05,020] multiqc [DEBUG ] No samples found: samblaster [2023-07-14 18:15:05,033] multiqc [DEBUG ] No samples found: samtools [2023-07-14 18:15:05,043] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-07-14 18:15:05,050] multiqc [DEBUG ] No samples found: bamtools [2023-07-14 18:15:05,058] multiqc [DEBUG ] No samples found: jellyfish [2023-07-14 18:15:05,076] multiqc [DEBUG ] No samples found: vcftools [2023-07-14 18:15:05,081] multiqc [DEBUG ] No samples found: longranger [2023-07-14 18:15:05,086] multiqc [DEBUG ] No samples found: stacks [2023-07-14 18:15:05,102] multiqc [DEBUG ] No samples found: varscan2 [2023-07-14 18:15:05,146] multiqc [DEBUG ] No samples found: bbmap [2023-07-14 18:15:05,157] multiqc [DEBUG ] No samples found: bismark [2023-07-14 18:15:05,167] multiqc [DEBUG ] No samples found: biscuit [2023-07-14 18:15:05,172] multiqc [DEBUG ] No samples found: hicexplorer [2023-07-14 18:15:05,176] multiqc [DEBUG ] No samples found: hicup [2023-07-14 18:15:05,180] multiqc [DEBUG ] No samples found: hicpro [2023-07-14 18:15:05,186] multiqc [DEBUG ] No samples found: salmon [2023-07-14 18:15:05,198] multiqc [DEBUG ] No samples found: kallisto [2023-07-14 18:15:05,211] multiqc [DEBUG ] No samples found: slamdunk [2023-07-14 18:15:05,216] multiqc [DEBUG ] No samples found: star [2023-07-14 18:15:05,232] multiqc [DEBUG ] No samples found: hisat2 [2023-07-14 18:15:05,242] multiqc [DEBUG ] No samples found: tophat [2023-07-14 18:15:05,247] multiqc [DEBUG ] No samples found: bowtie2 [2023-07-14 18:15:05,251] multiqc [DEBUG ] No samples found: bowtie1 [2023-07-14 18:15:05,265] multiqc [DEBUG ] No samples found: snpsplit [2023-07-14 18:15:05,269] multiqc [DEBUG ] No samples found: kat [2023-07-14 18:15:05,273] multiqc [DEBUG ] No samples found: leehom [2023-07-14 18:15:05,277] multiqc [DEBUG ] No samples found: adapterRemoval [2023-07-14 18:15:05,282] multiqc [DEBUG ] No samples found: clipandmerge [2023-07-14 18:15:05,286] multiqc [DEBUG ] No samples found: cutadapt [2023-07-14 18:15:05,290] multiqc [DEBUG ] No samples found: flexbar [2023-07-14 18:15:05,294] multiqc [DEBUG ] No samples found: kaiju [2023-07-14 18:15:05,298] multiqc [DEBUG ] No samples found: kraken [2023-07-14 18:15:05,303] multiqc [DEBUG ] No samples found: malt [2023-07-14 18:15:05,308] multiqc [DEBUG ] No samples found: trimmomatic [2023-07-14 18:15:05,314] multiqc [DEBUG ] No samples found: sickle [2023-07-14 18:15:05,319] multiqc [DEBUG ] No samples found: skewer [2023-07-14 18:15:05,323] multiqc [DEBUG ] No samples found: sortmerna [2023-07-14 18:15:05,340] multiqc [DEBUG ] No samples found: biobloomtools [2023-07-14 18:15:05,344] multiqc [DEBUG ] No samples found: fastq_screen [2023-07-14 18:15:05,348] multiqc [DEBUG ] No samples found: afterqc [2023-07-14 18:15:05,375] multiqc [DEBUG ] No samples found: fastp [2023-07-14 18:15:06,124] multiqc.modules.fastqc.fastqc [INFO ] Found 30 reports [2023-07-14 18:15:06,752] multiqc [DEBUG ] No samples found: pycoqc [2023-07-14 18:15:06,757] multiqc [DEBUG ] No samples found: minionqc [2023-07-14 18:15:06,761] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-07-14 18:15:06,773] multiqc [DEBUG ] No samples found: clusterflow [2023-07-14 18:15:06,778] multiqc [DEBUG ] No samples found: bcl2fastq [2023-07-14 18:15:06,783] multiqc [DEBUG ] No samples found: interop [2023-07-14 18:15:06,788] multiqc [DEBUG ] No samples found: ivar [2023-07-14 18:15:06,796] multiqc [DEBUG ] No samples found: flash [2023-07-14 18:15:06,818] multiqc [DEBUG ] No samples found: seqyclean [2023-07-14 18:15:06,818] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-07-14 18:15:06,818] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-07-14 18:15:06,818] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-07-14 18:15:06,818] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-07-14 18:15:06,818] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-07-14 18:15:06,818] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-07-14 18:15:06,818] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-07-14 18:15:06,818] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-07-14 18:15:06,818] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-07-14 18:15:06,819] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-07-14 18:15:06,855] multiqc [INFO ] Compressing plot data [2023-07-14 18:15:07,423] multiqc [INFO ] Report : multiqc_report.html [2023-07-14 18:15:07,424] multiqc [INFO ] Data : multiqc_data [2023-07-14 18:15:07,424] multiqc [DEBUG ] Moving data file from '/state/partition1/job-35402695/tmpnasnpizl/multiqc_data' to '/scratch/gencore/logs/html/HGWL2AFX5/merged/multiqc_data' [2023-07-14 18:15:07,547] multiqc [INFO ] MultiQC complete