HGWHTBGX7_n02_cdna_d.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGWHTBGX7_n02_cdna_d.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	78764942
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	5575983	7.079270114869125	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	574539	0.7294349305811715	No Hit
GCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	352759	0.4478629591322495	No Hit
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	226703	0.28782221410129394	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	645650	42.339954	1
AGCAGTG	676225	40.3529	2
TCAACGC	708150	38.500237	12
ATCAACG	708695	38.498188	11
TGGTATC	708100	38.455185	7
GTGGTAT	709205	38.41505	6
CAACGCA	710645	38.397186	13
TATCAAC	713765	38.267357	10
GTATCAA	712150	38.25871	9
GGTATCA	713165	38.226185	8
AGTGGTA	714145	38.1833	5
AACGCAG	718070	38.031284	14
CAGTGGT	717315	37.97631	4
ACGCAGA	719390	37.901844	15
AGAGTAC	714565	37.760242	19
CGCAGAG	723150	37.729694	16
GCAGAGT	723570	37.508545	17
CAGAGTA	723565	37.462425	18
GAGTACT	715905	37.40186	20
GCAGTGG	731280	37.29589	3