HGWHTBGX7_n02_cdna_c.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGWHTBGX7_n02_cdna_c.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	75449369
Sequences flagged as poor quality	0
Sequence length	50
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT	5386320	7.138986145795334	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	465153	0.6165101261483048	No Hit
GCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT	338542	0.448700902985683	No Hit
AGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT	217759	0.2886160651655019	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AAGCAGT	621605	42.40091	1
AGCAGTG	651865	40.35848	2
TCAACGC	682925	38.504505	12
TGGTATC	681075	38.500576	7
ATCAACG	683565	38.498524	11
GTGGTAT	682325	38.462856	6
CAACGCA	684965	38.4214	13
GTATCAA	686480	38.283257	9
TATCAAC	688445	38.267315	10
GGTATCA	686555	38.251244	8
AGTGGTA	687015	38.22218	5
AACGCAG	692065	38.058838	14
CAGTGGT	690600	37.997158	4
ACGCAGA	693815	37.91608	15
AGAGTAC	688410	37.777275	19
CGCAGAG	696255	37.77307	16
GCAGAGT	696800	37.53262	17
CAGAGTA	697360	37.448986	18
GAGTACT	690430	37.40314	20
GTACTTT	688305	37.304363	22