FastQCFastQC Report
Wed 6 Mar 2019
HGWH2AFXY_n02_CAMTA1_2019poolD_Input_g.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGWH2AFXY_n02_CAMTA1_2019poolD_Input_g.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2111559
Sequences flagged as poor quality0
Sequence length76
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG38940.18441350679758414No Hit

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGGGTAT1900.001893425612.89461920
CCGGCGT2300.00789292210.6520768
AGGGGGG3803.357318E-510.1362861
ACGCTCT5058.257126E-69.0140881
CGCTCTT4855.054735E-58.6609462
TGTTACG5159.1016496E-47.4756611
CTTCCGA5750.00292000786.69559146
TCTAATG8200.00320058065.5487350
TTCCGAT8550.0052395745.3215897
Produced by FastQC (version 0.11.5)