HGVKWBGX2_n01_sl40_grab_c08.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGVKWBGX2_n01_sl40_grab_c08.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20562189
Sequences flagged as poor quality	0
Sequence length	75
%GC	48

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	1956866	9.516817494479794	TruSeq Adapter, Index 8 (100% over 63bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAAG	176050	0.8561831622109883	TruSeq Adapter, Index 8 (100% over 63bp)
CCCCCACCCACGAGGAGCATCGTGGAAAAAGAAGACGTTCCAACCACGTCTTCAAAGCAAGTGGATTGATGTGAT	27784	0.13512180050480035	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATATCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	23064	0.11216704602802746	TruSeq Adapter, Index 8 (98% over 63bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TGCTTGA	259455	67.13942	58
GCCGTCT	260015	67.09869	49
GCTTGAA	262035	67.07377	59
ATGCCGT	263030	67.06518	47
AATCTCG	262720	67.06063	39
TGCCGTC	261515	67.031586	48
TCTCGTA	261885	67.020515	41
CGTATGC	265920	67.019844	44
TATGCCG	264580	67.01831	46
GTATGCC	266720	67.00493	45
CCGTCTT	262765	67.00186	50
CTTGAAA	264215	66.94701	60
ATCTCGT	263175	66.94631	40
CACACTT	277205	66.42613	31
GTCACAC	281280	66.3846	29
TCACACT	278895	66.36223	30
CTGCTTG	262360	65.87437	57
TTCTGCT	264965	65.583916	55
GAAAAAA	279510	65.474464	63
TGAAAAA	278000	65.43684	62