HGVJGBGX2_n01_9s-15_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGVJGBGX2_n01_9s-15_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	16202546
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATCAGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	187265	1.155775147930455	TruSeq Adapter, Index 9 (100% over 63bp)
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	24314	0.1500628358037064	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCC	20018	0.1235484842937647	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAACTG	17851	0.11017404301768377	No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGC	16278	0.10046569224367578	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TCGTATG	26210	63.563095	43
CTCGTAT	23960	63.153976	42
TATGCCG	26305	63.12155	46
GTATGCC	27025	61.47911	45
ATGCCGT	27085	61.36726	47
AGTCACG	27380	61.33606	28
CGTATGC	27240	61.210495	44
ACGTCTG	27955	60.56976	15
GTCACGA	27820	60.390965	29
CAGTCAC	27930	60.09136	27
CACGTCT	28245	60.045597	14
ACACGTC	28605	59.446693	13
GCCGTCT	28170	58.77149	49
CCGTCTT	28165	58.769855	50
CACGATC	28770	58.34922	31
GTCTGAA	29260	57.927475	17
TCAGATC	26305	57.261005	36
GCTTGAA	29485	56.26068	59
AGATCTC	26950	56.019093	38
AAAAAGG	26955	55.430866	69