HGVJGBGX2_n01_4w-58_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGVJGBGX2_n01_4w-58_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25823777
Sequences flagged as poor quality	0
Sequence length	75
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCC	42435	0.16432530376946794	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	40358	0.156282328491297	No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGC	29602	0.11463079161502983	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	29316	0.11352328514918635	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACTTGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	27303	0.10572814348574959	TruSeq Adapter, Index 8 (100% over 63bp)
GTCAATTCCTTTGAGTTTCATTCTTGCGAACGTACTCCCCAGGCGGGATACTTAACGCGTTAGCTACAGCACTGC	26983	0.10448897541207856	No Hit
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTA	26035	0.10081793999382815	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAACTG	25932	0.10041908277011531	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	4470	54.335415	42
TATGCCG	5265	52.2231	46
TCGTATG	5275	52.060513	43
ACGTCTG	6520	46.193256	15
CACGTCT	6655	45.567245	14
GTCACAC	6600	44.796295	29
AGTCACA	6650	44.56306	28
ATGCCGT	6180	44.546688	47
CAGTCAC	6850	43.312233	27
GTATGCC	6515	42.786293	45
ACACGTC	7385	41.436687	13
CACACTT	7120	41.331005	31
TTTTTCC	12350	40.68672	1
TCACACT	7365	40.237003	30
GTCTGAA	7870	38.488792	17
TGTTACC	7285	37.553947	13
CTTGAAT	7720	37.537735	35
TCTAGTT	8210	36.34893	7
TTTTCCA	14390	35.48713	2
TAGTTGT	7870	35.419727	9