HGVJGBGX2_n01_4w-15_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGVJGBGX2_n01_4w-15_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20708974
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	35369	0.17079069199661942	TruSeq Adapter, Index 5 (100% over 63bp)
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	28840	0.139263297158034	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAACTG	25239	0.12187470031108252	No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGC	24703	0.1192864504055102	No Hit
CTGACATGCGTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGG	24428	0.11795852368156916	No Hit
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTA	24177	0.1167464887444448	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	22597	0.10911694611234725	No Hit
CTTAAACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAAT	20970	0.10126044873106702	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	5945	55.360138	46
TCGTATG	5985	54.87711	43
CTCGTAT	5240	54.646996	42
ATGCCGT	6640	49.72117	47
ACGTCTG	7020	49.635597	15
CACAGTG	6925	48.870605	33
CAGTCAC	7050	48.248314	27
ACACAGT	7045	48.184967	32
AGTCACA	7075	47.785378	28
GTCACAC	7200	46.812027	29
CACGTCT	7465	46.769173	14
GTATGCC	7180	46.17489	45
ACACGTC	7595	46.15034	13
GTCTGAA	7655	45.608456	17
CACACAG	7555	45.297657	31
GCCGTCT	7345	44.291943	49
CGTATGC	8100	40.845745	44
ACAGTGA	8580	39.443935	34
CCGTCTT	8550	38.251465	50
TGCCGTC	8940	37.354294	48