HGVJGBGX2_n01_4s-58_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGVJGBGX2_n01_4s-58_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	15488381
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTGACCAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	25212	0.16278008656940968	TruSeq Adapter, Index 4 (100% over 63bp)
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	23560	0.15211402663712884	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCC	22528	0.14545096740582505	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	16220	0.10472366349975508	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAACTG	15881	0.10253492601970471	No Hit
CTGACATGCGTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGG	15643	0.100998290266749	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	4520	55.029934	46
CTCGTAT	3960	54.18903	42
TCGTATG	4645	53.921787	43
ACTGACC	4855	51.517044	32
AGTCACT	5090	49.138397	28
ACGTCTG	5245	48.87146	15
ATGCCGT	5255	47.333225	47
GTATGCC	5310	46.972897	45
CACGTCT	5525	46.70693	14
ACACGTC	5680	45.614567	13
CAGTCAC	5680	44.39865	27
CTGACCA	5885	42.383224	33
GTCTGAA	6285	40.94921	17
GCCGTCT	6185	39.825962	49
CCGTCTT	6385	38.90292	50
TGTTACC	4280	36.75641	13
TGCCGTC	6905	36.22269	48
CGTATGC	6955	36.11167	44
ACCAATC	5970	36.00227	36
CAATCTC	5995	35.564743	38