HGVJGBGX2_n01_4s-16_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGVJGBGX2_n01_4s-16_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14910407
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	40272	0.27009323085546894	TruSeq Adapter, Index 2 (100% over 63bp)
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCC	22442	0.15051232337252768	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	18837	0.12633457959933622	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	15279	0.10247205190307683	No Hit
CTGACATGCGTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGG	15272	0.10242510482778908	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	5910	56.973602	42
TATGCCG	6370	56.21588	46
TCGTATG	6335	56.146393	43
ACGTCTG	7220	51.55846	15
GTATGCC	7020	50.667217	45
TATCTCG	6830	49.552155	39
CACCGAT	7395	49.26335	31
CAGTCAC	7625	48.365543	27
CACGTCT	7790	48.095894	14
ATGCCGT	7470	47.84525	47
ACACGTC	7925	47.537796	13
CGATGTA	7835	46.232777	34
TGTATCT	7525	45.2502	37
GTCTGAA	8405	44.41235	17
AGTCACC	8305	44.239292	28
CCGATGT	8260	43.895584	33
GCCGTCT	8245	43.097065	49
CCGTCTT	8250	43.071808	50
CGTATGC	8565	41.60829	44
TGCCGTC	9345	38.503765	48