HGV7YBGX2_n01_9s-40_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGV7YBGX2_n01_9s-40_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9200975
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATTCCTTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	57198	0.6216515097584767	TruSeq Adapter, Index 27 (97% over 44bp)
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCC	13589	0.14769086971761144	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	11733	0.12751909444379536	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAACTG	10751	0.11684631248318793	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCCTA	9330	0.10140229703917247	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	7370	62.627934	44
TCGTATG	7895	62.046265	45
TATGCCG	8150	60.316578	48
ACGTCTG	8680	58.740353	15
GTATGCC	8420	58.382435	47
GTCACAT	8580	58.37675	29
ATGCCGT	8530	57.751194	49
TATCTCG	8005	57.74362	41
AGTCACA	8750	57.676228	28
ACATTCC	8845	56.27645	32
CACGTCT	9055	56.23181	14
CAGTCAC	8895	56.15432	27
TTATCTC	8265	55.926514	40
ACACGTC	9275	55.08428	13
CACATTC	9145	54.769497	31
CGTATGC	9020	54.4989	46
GCCGTCT	9105	53.83799	51
CCGTCTT	9210	53.224777	52
GTCTGAA	9685	52.784836	17
TGCCGTC	9685	50.72151	50