HGV7YBGX2_n01_4s-48_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGV7YBGX2_n01_4s-48_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10321882
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCC	19674	0.19060477536945297	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	16786	0.16262538168911445	TruSeq Adapter, Index 18 (97% over 40bp)
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	13755	0.13326058174274807	No Hit
TGATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATAGTAGGACTGTTTGATC	12716	0.12319458796370662	No Hit
CAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATAGTAGGACTGTTTGATCAATCT	10945	0.10603686420751564	No Hit
CCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATAGTAGGACTGTTTGATCAATC	10929	0.10588185371621184	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	10751	0.1041573620004569	No Hit
TTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCCTA	10489	0.10161906520535693	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	2610	54.32214	44
TCGTATG	2860	53.675205	45
GTCACGT	2975	51.944965	29
ACGTCCG	3080	50.17338	32
TATGCCG	3095	49.042645	48
TCACGTC	3175	48.564194	30
CGCACAT	3220	47.028038	37
AGTCACG	3365	45.924595	28
ACGTCTG	3515	44.94877	15
GTATGCC	3535	43.231297	47
ATGCCGT	3510	43.145874	49
CACGTCT	3760	42.387936	14
ACACGTC	3795	42.361034	13
CCGCACA	3640	42.26508	36
CAGTCAC	3790	41.411846	27
TGTTACC	4135	40.46305	13
TAGTTGT	4240	40.029587	9
TTACCTC	4230	39.960728	15
TCTAGTT	4610	39.507843	7
TTTTTCC	6905	37.77616	1