HGV7YBGX2_n01_4s-41_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGV7YBGX2_n01_4s-41_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	8030651
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTTCGGAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	13625	0.16966245949425518	TruSeq Adapter, Index 21 (97% over 40bp)
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAACTG	10928	0.13607863173234647	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	10102	0.12579303969254796	No Hit
CTTGCTTTGAGCACTCTAATTTCTTCAAAGTAACGGCGCCGGAGGCACGACCCGGCCAGTTAAGGCCAGGAGCGC	9397	0.11701417481596449	No Hit
CTTAAACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAAT	8115	0.10105033826024815	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTTTCG	2645	56.470524	33
TCGTATG	2610	53.795166	45
CTCGTAT	2315	52.75167	44
ACGTTTC	2860	52.5872	32
GTCACGT	2895	51.95143	29
TTTCGGA	2900	51.505016	35
CACGTTT	3025	49.71819	31
TTCGGAA	2995	49.295418	36
TATGCCG	2895	49.095695	48
ACGTCTG	3255	48.008446	15
TCGGAAT	3140	46.68946	37
AGTCACG	3285	45.78368	28
CACGTCT	3470	45.233807	14
CGTATGC	3185	44.300224	46
ACACGTC	3590	44.202553	13
CAGTCAC	3485	43.65112	27
ATGCCGT	3280	43.122585	49
GTATGCC	3395	41.560005	47
GTCTGAA	4100	38.36524	17
GCCGTCT	3840	35.2159	51