HGV7YBGX2_n01_4s-07_dr.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HGV7YBGX2_n01_4s-07_dr.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	10269050
Sequences flagged as poor quality	0
Sequence length	75
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTGAAACGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAA	16589	0.1615436676226136	TruSeq Adapter, Index 19 (97% over 40bp)
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGAGTAACCTAGATTGATCAAACAGTCC	16509	0.16076462769194813	No Hit
CCGGAACCCAAAGACTTTGATTTCTCATAAGGTGCCGGCGGAGTCCTATAAGCAACATCCGCCGATCCCTGGTCG	11661	0.1135548078936221	No Hit
CTTAAACCTATAACCATCTTTCGGCTAACCTAGCCTCCTCCGTCCCTCCGTACCAACAAGGGGTAGTACAGGAAT	11258	0.10963039424289492	No Hit
TGATCCAAGTATGAGTGTAGGGTAGTAACAGCACCTGATAGTCCTACAGAGGTTAGATAGTAGGACTGTTTGATC	11029	0.10740039244136507	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	2475	54.35724	44
TCGTATG	2920	53.397823	45
TATGCCG	2945	52.475742	48
TGAAACG	3015	52.4	35
CACGTGA	3040	52.082554	31
GTCACGT	3060	51.517193	29
AGTCACG	3170	49.83835	28
ACGTCTG	3295	49.205612	15
TCACGTG	3220	49.171585	30
CACGTCT	3595	45.291573	14
GAAACGA	3520	44.686398	36
GTATGCC	3530	44.170437	47
ACACGTC	3765	43.429996	13
ATGCCGT	3605	42.772633	49
CAGTCAC	3805	41.974323	27
GTCTGAA	3980	41.168774	17
TGTTACC	3420	37.018295	13
TAGTTGT	3535	36.985054	9
CGTATGC	4280	36.91388	46
CCGTCTT	4385	35.63593	52