FastQCFastQC Report
Thu 15 Aug 2024
HGTYWDRX5_1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTYWDRX5_1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences926816247
Sequences flagged as poor quality0
Sequence length301
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGACTCG35143913237.91896539767931No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG15438863616.65795528506742No Hit
GGCTTGGTCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTG399875774.314509713164318No Hit
GGCTTGGCATCGATGAAGAACGCAGCCGCTGTCTCTTATACACATCTCCG328531983.544736953667149No Hit
GGCTTGGTCATTTAGAGGAAGTAGAAGTCGTAACAAGGTTTCCGTAGGTG245615602.6501002846576123No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTG227810142.457986043483763No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTAGGTG216541672.336403474808745No Hit
GGCTTGGTCATTTAGAGGAAGAACGCAGCCGCTGTCTCTTATACACATCT194422662.0977476455481257No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCATAACAAGGTTTCCGTAGGTG106354361.1475236903135557No Hit
GGCTTGATCATTTAGAGGAAGGAGAAGTCGTAACAAGGTTTCCGTAGGTG53698750.5793893900092583No Hit
GGCTTGGTCATTTAGAGGAAGTACGCAGCCGCTGTCTCTTATACACATCT31205070.33669101184843603No Hit
GGCTTGGCATTGAGGAAGAACGCAGCCGCTGTCTCTTATACACATCTCCG24239420.2615342585810324No Hit
GGCTTGGTCATTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTGA23267350.251045987544066No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTATCCGTAGGTG22802310.2460283802081428No Hit
GGCTTGGTCATTTAGATGAAGAACGCAGCCGCTGTCTCTTATACACATCT20365430.21973535817828624No Hit
GGCGTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTAGGTG20160560.2175248876490617No Hit
GGCTTGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTTTCCGTTGGTG19123320.2063334567331986No Hit
GGCTTGGGCATCGATGAAGAACGCAGCCGCTGTCTCTTATACACATCTCC17938610.19355087977865368No Hit
GGTTGGCATCGATGAAGAACGCAGCCGCTGTCTCTTATACACATCTCCGA14092890.15205700208231243No Hit
GGCTTGGCATTTAGAGGAAGAACGCAGCCGCTGTCTCTTATACACATCTC13572590.146443160053926No Hit
CTGTAAAGATAAATGGGTCATCTAAAGAGTATGGAGCTGGGATTGGCTCG9572010.10327840098815187No Hit
CTGTAAAGATAAATGGGTCATCTAAGGAGTATGGAGCTGGGATTGACTCG9563030.10318151015322027No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)