FastQCFastQC Report
Fri 15 Mar 2019
HGTYHAFXY_n01_r4zt14tc2s84.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTYHAFXY_n01_r4zt14tc2s84.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12
Sequences flagged as poor quality0
Sequence length76
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCGTCTTTTTTTTTTTTTTTTTTTTTTTGGGAAGCCCACCCCAACCA18.333333333333332No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGA18.333333333333332No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA18.333333333333332No Hit
TCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTAGCGAAAACCCC18.333333333333332No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGACAAA18.333333333333332No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGG18.333333333333332No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAAT18.333333333333332No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAAAAAA18.333333333333332No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTGGGGGCGGGGGGG18.333333333333332No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAC18.333333333333332No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAACAC18.333333333333332No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGA18.333333333333332No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)