FastQCFastQC Report
Fri 15 Mar 2019
HGTYHAFXY_n01_r4zt14tc2s36.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTYHAFXY_n01_r4zt14tc2s36.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTAGGAAGGGC16.25No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAGGGCCCCCCCCCCCC16.25No Hit
GGGCAAGGCCCTTTTCCTGGACACCCGGACCCTGGAACACGAGAACCTAC16.25No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGCCCCCCCCAAA16.25No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG16.25No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAGACCA16.25No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAC16.25No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAA16.25No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGA16.25No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAG16.25No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGTGGGC16.25No Hit
GTGCTCTTCCGATCTGGATAGGGACGTGTGCTCTTCCAAAACTGTCTCTT16.25No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAAAACA16.25No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAA16.25No Hit
AGTTTGGAAACTAAAAAATGCACTCTAAACAACAGATGGGTTAGAAGCTG16.25No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACGGG16.25No Hit

[FAIL]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)