FastQCFastQC Report
Fri 15 Mar 2019
HGTYHAFXY_n01_r4zt14tc2s28.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTYHAFXY_n01_r4zt14tc2s28.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[WARN]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAGACCCC19.090909090909092No Hit
CTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAAA19.090909090909092No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACACGCGGCCACTTATAAAA19.090909090909092No Hit
CACCAACTCCGCGTAGCTGGTGGCCTCCTCCCCCAGGATCTCCAGGAAGA19.090909090909092No Hit
TAGTGAACCAGTACCGTGAGGGAAAGGTGAAAAGTACCCCGGAAGGGGAG19.090909090909092No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAAAA19.090909090909092No Hit
CTTCCGATCTGATTGGGGGCGCTCCGGACCTTGAGGATCACGTTGATGTC19.090909090909092No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACCCCC19.090909090909092No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGA19.090909090909092No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAACA19.090909090909092No Hit
GTGCTCTTCCGATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTAATA19.090909090909092No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)