FastQCFastQC Report
Wed 7 Jul 2021
HGTNGBGXJ_n01_VvHYH_ampPN94-B_s1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTNGBGXJ_n01_VvHYH_ampPN94-B_s1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences251048
Sequences flagged as poor quality0
Sequence length76
%GC33

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGG4900.19518179790318982No Hit
AGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTA4300.17128198591504412No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTAT4200.16729868391701985TruSeq Adapter, Index 6 (97% over 36bp)
GGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGGGTTTAGG3090.12308403173895031No Hit
CCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACCCTAAACC2960.11790573914151875No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)