FastQCFastQC Report
Wed 7 Jul 2021
HGTNGBGXJ_n01_VvFemaleYABBY3_3351.27-B_s2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTNGBGXJ_n01_VvFemaleYABBY3_3351.27-B_s2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences332571
Sequences flagged as poor quality0
Sequence length76
%GC30

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGT10070.30279248641643436TruSeq Adapter, Index 6 (97% over 36bp)
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGT6490.19514629958715585TruSeq Adapter, Index 6 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTAT6010.18071329129719668TruSeq Adapter, Index 6 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTA5510.16567890766182258TruSeq Adapter, Index 6 (97% over 36bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)