FastQCFastQC Report
Wed 7 Jul 2021
HGTNGBGXJ_n01_VvFemaleYABBY3_3351.27-B_s1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTNGBGXJ_n01_VvFemaleYABBY3_3351.27-B_s1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences181340
Sequences flagged as poor quality0
Sequence length76
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGT5600.30881217602294037TruSeq Adapter, Index 6 (97% over 36bp)
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGT3750.20679386787250467TruSeq Adapter, Index 6 (97% over 36bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTAT3710.204588066615198TruSeq Adapter, Index 6 (97% over 36bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCGGAGAATCTCGTA2860.15771478989743024TruSeq Adapter, Index 6 (97% over 36bp)
GGAGCACACGTCTGAACTCCAGATCGGAAGAGCACACGTCTGAACTCCAG2080.11470166537994927Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)