FastQCFastQC Report
Wed 7 Jul 2021
HGTNGBGXJ_n01_Halo_3351.27-B_s.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTNGBGXJ_n01_Halo_3351.27-B_s.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2057524
Sequences flagged as poor quality0
Sequence length76
%GC39

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTA110930.5391431643081684TruSeq Adapter, Index 3 (97% over 36bp)
GGAGCACACGTCTGAACTCCAGATCGGAAGAGCACACGTCTGAACTCCAG106590.5180498502083086Illumina Multiplexing PCR Primer 2.01 (100% over 30bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGTAT103960.5052674962722185TruSeq Adapter, Index 3 (97% over 36bp)
CAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGT46460.22580538550218612TruSeq Adapter, Index 3 (97% over 36bp)
GAGATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATGCGCATCTCGT37060.18011940565456344TruSeq Adapter, Index 3 (97% over 36bp)

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)