FastQCFastQC Report
Thu 13 Sep 2018
HGTFWBGX7_n01_HALO-OSbZIP24_retic.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHGTFWBGX7_n01_HALO-OSbZIP24_retic.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences886823
Sequences flagged as poor quality0
Sequence length76
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AGTCACG2200.028.64379128
TCGTATG2550.024.70532445
TCGTATC2700.024.63046338
CTCGTAT3000.023.33280644
GTCACGA2750.022.91503329
CGTATCT2750.022.90986439
TCTCGTA3050.021.80278843
CGTATGC3250.021.53797546
GCCGTCT3000.020.99834351
TATCTCG3050.020.65643741
CGAATTC3400.020.58893233
CGTCTGA3100.020.32097616
TTCGTAT3450.020.2905437
GAATTCG3300.020.15219934
ACGTCTG3150.019.99842315
ATGCCGT3350.019.850349
CACGAAT3750.019.6039831
CCGTCTT3250.019.38417852
GTATGCC3250.019.38417847
ATTCGTA3300.019.09263236
Produced by FastQC (version 0.11.5)